From: cmzmasek@gmail.com Date: Thu, 24 Feb 2011 08:40:57 +0000 (+0000) Subject: Edited wiki page PhyloBioRuby through web user interface. X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3acec2db6b99254e04ab420183423afa5903ff3b;p=jalview.git Edited wiki page PhyloBioRuby through web user interface. --- diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index 5b6ac60..85fc8a4 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -46,8 +46,8 @@ require 'bio' # Calculates the alignment using the MAFFT program on the local # machine with options '--maxiterate 1000 --localpair' # and stores the result in 'report'. -options = [ '--maxiterate', '1000', '--localpair' ] -mafft = Bio::MAFFT.new('path/to/mafft', options ) +options = ['--maxiterate', '1000', '--localpair'] +mafft = Bio::MAFFT.new('path/to/mafft', options) report = mafft.query_align( seqs) # Accesses the actual alignment @@ -68,8 +68,8 @@ require 'bio' # Calculates the alignment using the Muscle program on the local # machine with options '-quiet -maxiters 64' # and stores the result in 'report'. -options = [ '-quiet', '-maxiters', '64' ] -muscle = Bio::Muscle.new('path/to/muscle', options ) +options = ['-quiet', '-maxiters', '64'] +muscle = Bio::Muscle.new('path/to/muscle', options) report = muscle.query_align( seqs) # Accesses the actual alignment