From: Ben Soares <b.soares@dundee.ac.uk>
Date: Thu, 22 Jun 2023 13:35:12 +0000 (+0100)
Subject: JAL-4019 corrected to '>' to '>=' for percentage comparisons
X-Git-Tag: Release_2_11_4_0~261
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3acfdb3ddd5e3b785fd0880bcebc9e267a717bbe;p=jalview.git

JAL-4019 corrected to '>' to '>=' for percentage comparisons
---

diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java
index 9fea705..e9ff931 100644
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -337,9 +337,9 @@ public class Comparison
         // a long sequence.
         // check for at least 55% nucleotide, and nucleotide and ambiguity codes
         // (including N) must make up 95%
-        return ntCount * 100 > NUCLEOTIDE_COUNT_PERCENT * allCount
+        return ntCount * 100 >= NUCLEOTIDE_COUNT_PERCENT * allCount
                 && 100 * (ntCount + nCount
-                        + ntaCount) > NUCLEOTIDE_COUNT_LONG_SEQUENCE_AMBIGUITY_PERCENT
+                        + ntaCount) >= NUCLEOTIDE_COUNT_LONG_SEQUENCE_AMBIGUITY_PERCENT
                                 * allCount;
       }
       else if (allCount > NUCLEOTIDE_COUNT_VERY_SHORT_SEQUENCE)
@@ -347,7 +347,7 @@ public class Comparison
         // a short sequence.
         // check if a short sequence is at least 55% nucleotide and the rest of
         // the symbols are all X or all N
-        if (ntCount * 100 > NUCLEOTIDE_COUNT_PERCENT * allCount
+        if (ntCount * 100 >= NUCLEOTIDE_COUNT_PERCENT * allCount
                 && (nCount == aaCount || xCount == aaCount))
         {
           return true;