From: jprocter <Jim Procter>
Date: Wed, 5 Jan 2011 16:05:15 +0000 (+0000)
Subject: revised shmr service
X-Git-Tag: Release_2_7~324
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3b12b9d08114c5acef7f8186f0cf79d235fe3416;p=jalview.git

revised shmr service
---

diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java
index 86e606c..df9050b 100644
--- a/src/jalview/ws/rest/RestClient.java
+++ b/src/jalview/ws/rest/RestClient.java
@@ -281,7 +281,7 @@ public class RestClient extends WSClient implements WSClientI,
 
   public static RestClient makeShmmrRestClient()
   {
-    String action = "Analyse", description = "Sequence Harmony and Multi-Relief (UNSTABLE!)", name = "SHMR";
+    String action = "Analyse", description = "Sequence Harmony and Multi-Relief (UNSTABLE!)", name = "Sequence Harmony";
     Hashtable<String, InputType> iparams = new Hashtable<String, InputType>();
     jalview.ws.rest.params.JobConstant toolp;
     //toolp = new jalview.ws.rest.JobConstant("tool","jalview");
@@ -296,10 +296,13 @@ public class RestClient extends WSClient implements WSClientI,
     iparams.put(toolp.token, toolp);
     
     jalview.ws.rest.params.Alignment aliinput = new jalview.ws.rest.params.Alignment();
-    aliinput.token = "ali_file";
-    aliinput.writeAsFile=true;
-    iparams.put("ali_file", aliinput);
+    aliinput.token = "ali";//_file";
+    aliinput.writeAsFile=false;//true;
+    //aliinput.token = "ali_file";
+    //aliinput.writeAsFile=true;
+    iparams.put(aliinput.token, aliinput);
     jalview.ws.rest.params.SeqGroupIndexVector sgroups = new jalview.ws.rest.params.SeqGroupIndexVector();
+    sgroups.minsize=2;
     iparams.put("groups", sgroups);
     sgroups.token = "groups";
     sgroups.sep = " ";