From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 17 Oct 2013 10:25:11 +0000 (+0100)
Subject: JAL-1233 TODO concerning the way we propagate annotation colourschemes to new groups.
X-Git-Tag: Jalview_2_9~218^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3b4eda86f1f240a932cc778658dc1fbe56e9630d;p=jalview.git

JAL-1233 TODO concerning the way we propagate annotation colourschemes to new groups.
---

diff --git a/src/jalview/appletgui/AnnotationColourChooser.java b/src/jalview/appletgui/AnnotationColourChooser.java
index c9e9ee4..f9594eb 100644
--- a/src/jalview/appletgui/AnnotationColourChooser.java
+++ b/src/jalview/appletgui/AnnotationColourChooser.java
@@ -465,6 +465,7 @@ public class AnnotationColourChooser extends Panel implements
 
     av.setGlobalColourScheme(acg);
 
+    // TODO: per group colour propagation not always desired
     if (av.getAlignment().getGroups() != null)
     {
       for (SequenceGroup sg : ap.av.getAlignment().getGroups())