From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Mon, 1 Aug 2016 16:21:08 +0000 (+0100)
Subject: JAL-2164 bugfix to convert insCodes of '\000' to ' ' in JmolParser, this fixes the... 
X-Git-Tag: Release_2_10_0~124^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3de428be8a8c1beafa944d255cfee27089672b29;p=jalview.git

JAL-2164 bugfix to convert insCodes of '\000' to ' ' in JmolParser, this fixes the xml marshalling bug
---

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index baebe08..ea969ff 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -209,7 +209,8 @@ public class JmolParser extends StructureFile implements JmolStatusListener
         Atom curAtom = new Atom(atom.x, atom.y, atom.z);
         curAtom.atomIndex = atom.getIndex();
         curAtom.chain = atom.getChainIDStr();
-        curAtom.insCode = atom.group.getInsertionCode();
+        curAtom.insCode = atom.group.getInsertionCode() == '\000' ? ' '
+                : atom.group.getInsertionCode();
         curAtom.name = atom.getAtomName();
         curAtom.number = atom.getAtomNumber();
         curAtom.resName = atom.getGroup3(true);