From: arngucci <arnaud.gucciardi@gmail.com>
Date: Mon, 7 Jun 2021 08:32:50 +0000 (+0200)
Subject: JAL-3829_spike minor changes
X-Git-Tag: Release_2_11_2_0~39^2~49
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3e3d713363370f45a41e8cbd4dfb374129a86c54;p=jalview.git

JAL-3829_spike minor changes
---

diff --git a/src/jalview/ws/dbsources/TDBeacons.java b/src/jalview/ws/dbsources/TDBeacons.java
index 12fefea..b2fbc17 100644
--- a/src/jalview/ws/dbsources/TDBeacons.java
+++ b/src/jalview/ws/dbsources/TDBeacons.java
@@ -70,6 +70,8 @@ public class TDBeacons extends DbSourceProxyImpl
   private static final String DEFAULT_UNIPROT_DOMAIN = "https://www.uniprot.org";
 
   private static final String BAR_DELIMITER = "|";
+  
+  private static final String DEFAULT_THREEDBEACONS_DOMAIN = "https://wwwdev.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons-hub-api/uniprot/summary/";
 
   /**
    * Constructor
@@ -82,6 +84,7 @@ public class TDBeacons extends DbSourceProxyImpl
   private String getDomain()
   {
     return Cache.getDefault("UNIPROT_DOMAIN", DEFAULT_UNIPROT_DOMAIN);
+    //return Cache.getDefault("3DB_DOMAIN", DEFAULT_THREEDBEACONS_DOMAIN );
   }
 
   /*
@@ -145,6 +148,7 @@ public class TDBeacons extends DbSourceProxyImpl
 
       String downloadstring = getDomain() + "/uniprot/" + queries
               + ".xml";
+//      String downloadstring = getDomain() + queries + ".json";
 
       URL url = new URL(downloadstring);
       URLConnection urlconn = url.openConnection();
diff --git a/test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java b/test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java
index 539af37..0656d67 100644
--- a/test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java
+++ b/test/jalview/fts/threedbeacons/TDBeaconsFTSRestClientTest.java
@@ -278,7 +278,7 @@ public class TDBeaconsFTSRestClientTest
     try
     {
       wantedFields.add(TDBeaconsFTSRestClient.getInstance()
-              .getDataColumnByNameOrCode("Model id"));
+              .getDataColumnByNameOrCode("Model_id"));
       wantedFields.add(TDBeaconsFTSRestClient.getInstance()
               .getDataColumnByNameOrCode("model_url"));
       wantedFields.add(TDBeaconsFTSRestClient.getInstance()