From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 24 Oct 2017 14:10:09 +0000 (+0100)
Subject: JAL-2541 only need to shift features for ‘internal’ cut
X-Git-Tag: Release_2_11_1_0~98^2~23^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3ed9d5436295b568be972ad3670867514493d993;p=jalview.git

JAL-2541 only need to shift features for ‘internal’ cut
---

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 4c2f8e7..a3ad0c2 100644
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -558,6 +558,11 @@ public class EditCommand implements CommandI
           }
           command.oldds[i] = oldds;
 
+          // do we need to edit sequence features for new sequence ?
+          if (oldds != sequence.getDatasetSequence()
+                  || (cutIsInternal
+                          && sequence.getFeatures().hasFeatures()))
+          {
             if (cutPositions != null)
             {
               cutFeatures(command, sequence, cutPositions.getBegin(),