From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 6 Sep 2012 22:01:24 +0000 (+0100)
Subject: JAL-842 documentation
X-Git-Tag: Jalview_2_9~312
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3f2b8374416a4e6388984481ddcddd6e61c458f5;p=jalview.git

JAL-842 documentation
---

diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html
index 3537781..8c75586 100755
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -161,7 +161,8 @@ not be accessible when in 'Cursor Mode' (toggled with the F2 key).</em></p>
         of the methods described above, Jalview will open a 3D interactive 
         view of the file.<br>
         These entries will only be present if the sequence has <a
-			href="../features/viewingpdbs.html">associated PDB structures</a>.</em><br>
+			href="../features/viewingpdbs.html">associated PDB structures</a>.<br/>
+			If the sequence or alignment has RNA structure, then <strong>2D RNA</strong> entries will also be present enabling you to open a linked view of the RNA structure in <a href="../features/varna.html">VARNA</a>.</em><br>
       </li>
     </ul>
   </li>