From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Fri, 26 Feb 2016 10:41:27 +0000 (+0000)
Subject: JAL-1994 fix for broken tests
X-Git-Tag: Release_2_10_0~307
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3fab3c719c7954ef6460764379b559773af4b92b;p=jalview.git

JAL-1994 fix for broken tests
---

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 7bbe677..3c69961 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1557,7 +1557,9 @@ public abstract class AlignmentViewport implements AlignViewportI,
     }
     else
     {
-      if (alignment.getHiddenSequences() != null)
+      HiddenSequences hiddenSeqs = alignment.getHiddenSequences();
+      if (hiddenSeqs != null && hiddenSeqs.hiddenSequences != null
+              && hiddenSeqs.hiddenSequences.length > 0)
       {
         iSize = alignment.getHiddenSequences().getFullAlignment()
                 .getHeight();
diff --git a/test/jalview/analysis/TestAlignSeq.java b/test/jalview/analysis/TestAlignSeq.java
index d6342ef..43ebd63 100644
--- a/test/jalview/analysis/TestAlignSeq.java
+++ b/test/jalview/analysis/TestAlignSeq.java
@@ -119,7 +119,7 @@ public class TestAlignSeq
     String expected = "Score = 320\nLength of alignment = 10\nSequence Seq1 :  3 - 18 (Sequence length = 14)\nSequence Seq1 :  1 - 10 (Sequence length = 10)\n\n"
             + "Seq1 SDFAQQQRRR\n"
             + "     |||||||   \n"
-            + "Seq1 SDFAQQQSSS\n\n" + "Percentage ID = 70.00\n\n";
+            + "Seq1 SDFAQQQSSS\n\n" + "Percentage ID = 70.00\n";
     assertEquals(expected, baos.toString());
   }
 }