From: James Procter <j.procter@dundee.ac.uk>
Date: Tue, 3 Oct 2023 10:45:55 +0000 (+0100)
Subject: JAL-4061 JAL-4062 update find box image and docs in help
X-Git-Tag: Release_2_11_3_0~6^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3fd83a7306fcc239ce9091afd884da8613a5d76e;p=jalview.git

JAL-4061 JAL-4062 update find box image and docs in help
---

diff --git a/help/help/html/features/search.html b/help/help/html/features/search.html
index d559db8..6889d84 100755
--- a/help/help/html/features/search.html
+++ b/help/help/html/features/search.html
@@ -36,7 +36,7 @@ td {
   </p>
   <p>The search box is displayed by pressing Control and F or
     selecting &quot;Find...&quot; from the &quot;Search&quot; menu.</p>
-  <img src="search.png" width="400" height="152">
+  <img src="search.png"  height="152">
   <p>&quot;Find next&quot; will find the next occurrence of the
     query and adjust the alignment window view to show it, and
     &quot;Find all&quot; highlights all matches for a query. The
@@ -46,18 +46,24 @@ td {
   <ul>
     <li>The search uses regular expressions. (understands a mixture
       of posix and perl style regex - see below for a summary)</li>
-    <li>Gaps are ignored when matching the query to the sequences
-      in the alignment.</li>
-    <li>Hidden columns can optionally be ignored (<em>since Jalview 2.11</em>)</li>
-    <li>The search is applied to both sequences and their IDs. It can
-      optionally also be applied to the description string (<em>since Jalview
-        2.10</em>), and sequence feature descriptions (<em>since Jalview 2.11.2.5</em>).
-    </li>
-    <li>If a region is selected, then search will <strong>only</strong>
+		<li>If a region is selected, then search will <strong>only</strong>
       be performed on that region.<br />
     <em>Tip: to quickly clear the current selection, click the
         alignment view you wish to search, then press 'Escape'.</em>
     </li>
+    <li>Gaps are ignored when matching the query to the sequences
+      in the alignment.</li>
+    <li>Hidden columns can optionally be ignored (<em>since Jalview 2.11</em>)</li>
+		<li>The search is applied to both sequences and their IDs. <br />
+			Check boxes also enable searching of:
+			<ul>
+				<li><strong>Sequence description</strong> (<em>since Jalview 2.10</em>)
+				</li>
+				<li><strong>Sequence Feature</strong> type and description for currently displayed features (<em>since Jalview
+						2.11.3.0</em>)
+				</li>
+			</ul>
+		</li>
     <li>Tick the &quot;Match Case&quot; box to perform a case
       sensitive search.</li>
     <li>To access a <a href="#queryhistory">previously used
@@ -87,9 +93,11 @@ td {
   <strong>Copying highlighted regions to a new alignment</strong>
   </p>
   <p>
-    You can copy the currently highlighted matching regions of sequences to the clipboard with alt-Command-C.    
+	Press <strong>Copy</strong> button or type Ctrl (Cmd on OSX) + Shift +
+	C to copy highlighted search results to the clipboard, enabling them
+	to be pasted to a new alignment (via Shift+Ctrl (or Cmd) + V).
   </p>
-  <p>
+	<p>
 
     <strong>A quick Regular Expression Guide</strong>
   </p>
diff --git a/help/help/html/features/search.png b/help/help/html/features/search.png
index 47c18f4..9178b9a 100644
Binary files a/help/help/html/features/search.png and b/help/help/html/features/search.png differ
diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md
index 8eba74a..01a54f6 100644
--- a/help/markdown/releases/release-2_11_3_0.md
+++ b/help/markdown/releases/release-2_11_3_0.md
@@ -13,7 +13,7 @@ channel: "release"
 - <!-- JAL-4019 --> Ambiguous Base Colourscheme
 - <!-- JAL-4061 --> Find can search sequence features' type and description
 - <!-- JAL-4062 --> Hold down Shift + CMD/CTRL C to copy highlighted regions as new sequences
-- <!-- JAL-1556 --> Quickly enable select and/or colour by for displayed annotation row via its popup menu
+- <!-- JAL-1556 --> Quickly enable select and/or colour by for displayed annotation row via annotation panel popup menu
 - <!-- JAL-4094 --> Shift+Click+Drag to adjust height of all annotation tracks of same type
 - <!-- JAL-4190 --> Pressing escape in tree panel clears any current selection