From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 3 Apr 2015 01:26:51 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=40b9c8b6b0bd60c674df37416c96d78726109b6b;p=jalview.git

in progress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
index 44ab075..6698887 100644
--- a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
@@ -220,7 +220,7 @@ module Evoruby
 #          end
 
           cmd = decorator + ' ' +  DECORATOR_OPTIONS_SEQ_NAMES + ' ' +
-           '-f=n ' + seqs_file_name + ' ' +
+           '-f=n ' + phylogeny_file + ' ' +
            ids_mapfile_name + ' ' + outfile
           puts cmd
           begin