From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 1 Dec 2016 12:15:04 +0000 (+0000)
Subject: JAL-1933 update the bounds for the Gap annotation row each time it is computed
X-Git-Tag: Release_2_11_0~62^2~37^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=41c34ccf7054239554932deca6f64042231977b5;p=jalview.git

JAL-1933 update the bounds for the Gap annotation row each time it is computed
---

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index b5dab6f..e682e2c 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -313,7 +313,9 @@ public class AAFrequency
        */
       return;
     }
-
+    // always set ranges again
+    consensus.graphMax = nseq;
+    consensus.graphMin = 0;
     for (int i = startCol; i < endCol; i++)
     {
       ProfileI profile = profiles.get(i);
diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 05688cb..bbd3ce4 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -170,10 +170,14 @@ public class AlignmentAnnotation
    */
   private Map<Integer, Annotation> sequenceMapping;
 
-  /** DOCUMENT ME!! */
+  /**
+   * lower range for quantitative data
+   */
   public float graphMin;
 
-  /** DOCUMENT ME!! */
+  /**
+   * Upper range for quantitative data
+   */
   public float graphMax;
 
   /**