From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 22 Jun 2011 01:30:34 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=42c980cacac4ce22b15a90e86760a868190411af;p=jalview.git

in progress
---

diff --git a/forester/ruby/evoruby/lib/evo/apps/taxonomy_processor.rb b/forester/ruby/evoruby/lib/evo/apps/taxonomy_processor.rb
index 6abfa85..39a48b7 100644
--- a/forester/ruby/evoruby/lib/evo/apps/taxonomy_processor.rb
+++ b/forester/ruby/evoruby/lib/evo/apps/taxonomy_processor.rb
@@ -199,7 +199,8 @@ module Evoruby
     def modify_name( desc, counter, file, species_map, extract_taxonomy )
       new_desc = nil
       my_species = nil
-      if desc =~ /^>?\s*\S{1,10}_([0-9A-Z]{3,5})/
+     # if desc =~ /^>?\s*\S{1,10}_([0-9A-Z]{3,5})/
+      if desc =~ /^>?\s*\S{1,10}_([A-Z]{3,5})/
         new_desc = counter.to_s( 16 ) + "_" + $1
       elsif SIMPLE
         new_desc = counter.to_s( 16 )