From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 5 Dec 2016 21:43:58 +0000 (+0000)
Subject: JAL-2349 contact map interface todo
X-Git-Tag: Release_2_11_3_0~23^2~60^2~9^2~22
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=42eaf2c84c46b919aa2d7abd3c2724130daaf6f9;p=jalview.git

JAL-2349 contact map interface todo
---

diff --git a/src/jalview/renderer/ContactMapRenderer.java b/src/jalview/renderer/ContactMapRenderer.java
index c0339cc..1f235b3 100644
--- a/src/jalview/renderer/ContactMapRenderer.java
+++ b/src/jalview/renderer/ContactMapRenderer.java
@@ -79,6 +79,8 @@ public class ContactMapRenderer implements AnnotationRowRendererI
       // profl[1] is the number of values in the profile
       for (int stp = 0, ht = y2, eht = y2 - _aa.graphHeight; ht > eht; ht -= scale, stp++)
       {
+        // TODO show maximum colour for range
+        // also need a 'getMaxPosForRange(start,end)'
         g.setColor(contacts
                 .getColorForScore((int) (stp * step * ((double) _aa.graphHeight / (double) contacts
                         .getContactHeight()))));