From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 11 Jul 2013 12:53:27 +0000 (+0100)
Subject: JAL-1347 make it efficient to call getConsensus to test identity of alignment annotat... 
X-Git-Tag: Jalview_2_9~226^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=45043731e74856fbf6f181e508b8d79316048ce2;p=jalview.git

JAL-1347 make it efficient to call getConsensus to test identity of alignment annotation rows
---

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index c42a955..65dc13f 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1034,12 +1034,12 @@ public class SequenceGroup implements AnnotatedCollectionI
     {
       consensus = new AlignmentAnnotation("", "", new Annotation[1], 0f,
               100f, AlignmentAnnotation.BAR_GRAPH);
+      consensus.hasText = true;
+      consensus.autoCalculated = true;
+      consensus.groupRef = this;
+      consensus.label = "Consensus for " + getName();
+      consensus.description = "Percent Identity";
     }
-    consensus.hasText = true;
-    consensus.autoCalculated = true;
-    consensus.groupRef = this;
-    consensus.label = "Consensus for " + getName();
-    consensus.description = "Percent Identity";
     return consensus;
   }