From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 22 Jun 2020 11:17:59 +0000 (+0100)
Subject: JAL-3664 update colours to enable HMM colouring options after a paste or load of... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4576f4f4b7812b69147e2f91e00667f17dc57fed;p=jalview.git

JAL-3664 update colours to enable HMM colouring options after a paste or load of an HMM model
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 1152a6e..7f8c9c1 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -2480,6 +2480,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           }
           buildSortByAnnotationScoresMenu();
         }
+        // TODO: this should be triggered by alignment.propertyChanged ?
+        buildColourMenu();
         viewport.firePropertyChange("alignment", null,
                 alignment.getSequences());
         if (alignPanels != null)
diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index b6701a3..7061938 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -454,6 +454,11 @@ public class FileLoader implements Runnable
               }
               viewport.getAlignPanel().adjustAnnotationHeight();
               viewport.updateSequenceIdColours();
+              // update HMM colour options 
+              if (alignFrame != null)
+              {
+                alignFrame.buildColourMenu();
+              }
             }
           }
           else