From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 1 May 2014 14:06:29 +0000 (+0100)
Subject: fix for JAL-1495 - initialise menu entry from current state of apply to all groups... 
X-Git-Tag: Jalview_2_9~190^2~15
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=466597bff88ce56ec689f826e49d4bc3227ea0fe;p=jalview.git

fix for JAL-1495 - initialise menu entry from current state of apply to all groups flag !
---

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 5e6df04..fbb61de 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -158,7 +158,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     showConsensusHistogram.setState(viewport.isShowConsensusHistogram());
     showSequenceLogo.setState(viewport.isShowSequenceLogo());
     normSequenceLogo.setState(viewport.isNormaliseSequenceLogo());
-
+    applyToAllGroups.setState(viewport.getColourAppliesToAllGroups());
+    
     seqLimits.setState(viewport.showJVSuffix);
 
     if (applet != null)