From: tcofoegbu Date: Thu, 3 Sep 2015 15:24:47 +0000 (+0100) Subject: JAL-1859 JAL-857 updated all reference of JmolApplet-12.2.4.jar to JmolApplet-14... X-Git-Tag: Release_2_10_0~475^2~2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=472f47fc68c6f117334a76c0faffed5c86511fcd;p=jalview.git JAL-1859 JAL-857 updated all reference of JmolApplet-12.2.4.jar to JmolApplet-14.2.14_2015.06.11.jar --- diff --git a/examples-jbake/content/appletParameters.html b/examples-jbake/content/appletParameters.html index b936824..00817a8 100644 --- a/examples-jbake/content/appletParameters.html +++ b/examples-jbake/content/appletParameters.html @@ -334,7 +334,7 @@ the applet can be interacted with via its
  • RNA secondary structure annotation row
  • -
  • Jmol compatibility updated to Jmol 12.2.x series - download the JmolApplet here
  • +
  • Jmol compatibility updated to Jmol 12.2.x series - download the JmolApplet here
  • To use Jmol as the structure viewer for Jalview, you must include the jar file in the applet archive argument thus:
    archive="jalviewApplet.jar,Jmol-12.2.4.jar"
    diff --git a/examples-jbake/content/applets.html b/examples-jbake/content/applets.html index 011c10e..5049e30 100644 --- a/examples-jbake/content/applets.html +++ b/examples-jbake/content/applets.html @@ -1,7 +1,7 @@ title=JalviewLite Examples type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar status=published level=0 class=jvl_examples.ftl diff --git a/examples-jbake/content/embedded.html b/examples-jbake/content/embedded.html index 3b6fc63..90a7fd0 100644 --- a/examples-jbake/content/embedded.html +++ b/examples-jbake/content/embedded.html @@ -1,7 +1,7 @@ title=Embedded Alignment type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar class=jvl_embedded.ftl status=published level=2 diff --git a/examples-jbake/content/embeddedWJmol.html b/examples-jbake/content/embeddedWJmol.html index ecc5769..6e42245 100644 --- a/examples-jbake/content/embeddedWJmol.html +++ b/examples-jbake/content/embeddedWJmol.html @@ -1,7 +1,7 @@ title=Jalview and Jmol type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar class=jvl_embeddedWJmol.ftl hclass=jvl_embeddedWJmol_hdr.ftl status=published diff --git a/examples-jbake/content/formComplete.html b/examples-jbake/content/formComplete.html index c2ee860..6a3f71e 100644 --- a/examples-jbake/content/formComplete.html +++ b/examples-jbake/content/formComplete.html @@ -1,7 +1,7 @@ title=Access from Javascript type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar class=jvl_formComplete.ftl status=published level=2 diff --git a/examples-jbake/content/javascriptLaunch.html b/examples-jbake/content/javascriptLaunch.html index 6a0dc9b..1315ee9 100644 --- a/examples-jbake/content/javascriptLaunch.html +++ b/examples-jbake/content/javascriptLaunch.html @@ -1,7 +1,7 @@ title=Javascript Launch type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar class=jvl_javascriptLaunch.ftl status=published level=2 diff --git a/examples-jbake/content/linkedapplets_ng.html b/examples-jbake/content/linkedapplets_ng.html index 310ffd6..f220c75 100644 --- a/examples-jbake/content/linkedapplets_ng.html +++ b/examples-jbake/content/linkedapplets_ng.html @@ -1,7 +1,7 @@ title=Linked JalviewLites type=page jvl=jalviewApplet.jar -jmol=JmolApplet-12.2.4.jar +jmol=JmolApplet-14.2.14_2015.06.11.jar class=jvl_linkedapplets_ng.ftl status=published level=1 diff --git a/examples-jbake/content/u_applets.html b/examples-jbake/content/u_applets.html index 149cafa..1a48358 100644 --- a/examples-jbake/content/u_applets.html +++ b/examples-jbake/content/u_applets.html @@ -1,7 +1,7 @@ title=JalviewLite Examples type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true status=published level=0 diff --git a/examples-jbake/content/u_embedded.html b/examples-jbake/content/u_embedded.html index 0b68657..d295406 100644 --- a/examples-jbake/content/u_embedded.html +++ b/examples-jbake/content/u_embedded.html @@ -1,7 +1,7 @@ title=Embedded Alignment type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true class=jvl_embedded.ftl status=published diff --git a/examples-jbake/content/u_embeddedWJmol.html b/examples-jbake/content/u_embeddedWJmol.html index af9fe88..0b54b60 100644 --- a/examples-jbake/content/u_embeddedWJmol.html +++ b/examples-jbake/content/u_embeddedWJmol.html @@ -1,7 +1,7 @@ title=Jalview and Jmol type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true class=jvl_embeddedWJmol.ftl hclass=jvl_embeddedWJmol_hdr.ftl diff --git a/examples-jbake/content/u_formComplete.html b/examples-jbake/content/u_formComplete.html index c4f5ba6..86700e2 100644 --- a/examples-jbake/content/u_formComplete.html +++ b/examples-jbake/content/u_formComplete.html @@ -1,7 +1,7 @@ title=Access from Javascript type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true class=jvl_formComplete.ftl status=published diff --git a/examples-jbake/content/u_javascriptLaunch.html b/examples-jbake/content/u_javascriptLaunch.html index 080cd3b..075b8ca 100644 --- a/examples-jbake/content/u_javascriptLaunch.html +++ b/examples-jbake/content/u_javascriptLaunch.html @@ -1,7 +1,7 @@ title=Javascript Launch type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true class=jvl_javascriptLaunch.ftl status=published diff --git a/examples-jbake/content/u_linkedapplets_ng.html b/examples-jbake/content/u_linkedapplets_ng.html index 43e1ef5..69003f9 100644 --- a/examples-jbake/content/u_linkedapplets_ng.html +++ b/examples-jbake/content/u_linkedapplets_ng.html @@ -1,7 +1,7 @@ title=Linked JalviewLites type=page jvl=u_jalviewApplet.jar -jmol=u_JmolApplet-12.2.4.jar +jmol=u_JmolApplet-14.2.14_2015.06.11.jar alteg=true class=jvl_linkedapplets_ng.ftl status=published diff --git a/examples/appletParameters.html b/examples/appletParameters.html index a0f25d4..976d8f9 100644 --- a/examples/appletParameters.html +++ b/examples/appletParameters.html @@ -358,7 +358,7 @@ the applet can be interacted with via its
  • RNA secondary structure annotation row
  • -
  • Jmol compatibility updated to Jmol 12.2.x series - download the JmolApplet here
  • +
  • Jmol compatibility updated to Jmol 12.2.x series - download the JmolApplet here
  • To use Jmol as the structure viewer for Jalview, you must include the jar file in the applet archive argument thus:
    archive="jalviewApplet.jar,Jmol-12.2.4.jar"
    diff --git a/examples/applets.html b/examples/applets.html index 501dc40..6ea7567 100644 --- a/examples/applets.html +++ b/examples/applets.html @@ -21,7 +21,7 @@
    -

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar +

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar

    @@ -43,7 +43,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> @@ -66,7 +66,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> @@ -91,7 +91,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> @@ -117,7 +117,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> @@ -148,7 +148,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> @@ -172,7 +172,7 @@ Try out JalviewLite by pressing one of the buttons below.
    + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> diff --git a/examples/embedded.html b/examples/embedded.html index 4b0531c..5891225 100644 --- a/examples/embedded.html +++ b/examples/embedded.html @@ -22,7 +22,7 @@
    -

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar +

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar

    @@ -40,7 +40,7 @@ + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar"> diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html index 9b7389d..1c4c692 100644 --- a/examples/embeddedWJmol.html +++ b/examples/embeddedWJmol.html @@ -189,7 +189,7 @@ jQuery.extend(Drupal.settings, {"basePath":"\/","pathPrefix":"","ajaxPageState":
    +archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar" width="0" height="0"> diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html index 5da9e59..770c9b9 100644 --- a/examples/linkedapplets_ng.html +++ b/examples/linkedapplets_ng.html @@ -21,7 +21,7 @@
    -

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar +

    Quick Links to jars for example:
    jalviewApplet.jar and JmolApplet.jar

    @@ -38,7 +38,7 @@ + code="jalview.bin.JalviewLite" width="800" height="300" id="jvapp" mayscript="True" scriptable="True" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar"> @@ -61,7 +61,7 @@ + code="jalview.bin.JalviewLite" width="800" height="300" id="jvfollower" mayscript="True" scriptable="True" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar">