From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 12 Oct 2005 15:36:46 +0000 (+0000)
Subject: updated core objects from latest schema (dbRef)
X-Git-Tag: Release_0.2~456
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=47b7b25fb4bb7d41bf9e49a73fc455be15d63e13;p=vamsas.git

updated core objects from latest schema (dbRef)


git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@64 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/org/vamsas/objects/core/DbRef.java b/src/org/vamsas/objects/core/DbRef.java
index 48b9a74..ad8f79f 100644
--- a/src/org/vamsas/objects/core/DbRef.java
+++ b/src/org/vamsas/objects/core/DbRef.java
@@ -38,17 +38,17 @@ implements java.io.Serializable
     /**
      * Field _source
      */
-    private java.lang.Object _source;
+    private java.lang.String _source;
 
     /**
      * Field _version
      */
-    private java.lang.Object _version;
+    private java.lang.String _version;
 
     /**
      * Field _accessionId
      */
-    private java.lang.Object _accessionId;
+    private java.lang.String _accessionId;
 
     /**
      * Field _id
@@ -123,13 +123,13 @@ implements java.io.Serializable
     /**
      * Returns the value of field 'accessionId'.
      * 
-     * @return Object
+     * @return String
      * @return the value of field 'accessionId'.
      */
-    public java.lang.Object getAccessionId()
+    public java.lang.String getAccessionId()
     {
         return this._accessionId;
-    } //-- java.lang.Object getAccessionId() 
+    } //-- java.lang.String getAccessionId() 
 
     /**
      * Returns the value of field 'id'.
@@ -145,24 +145,24 @@ implements java.io.Serializable
     /**
      * Returns the value of field 'source'.
      * 
-     * @return Object
+     * @return String
      * @return the value of field 'source'.
      */
-    public java.lang.Object getSource()
+    public java.lang.String getSource()
     {
         return this._source;
-    } //-- java.lang.Object getSource() 
+    } //-- java.lang.String getSource() 
 
     /**
      * Returns the value of field 'version'.
      * 
-     * @return Object
+     * @return String
      * @return the value of field 'version'.
      */
-    public java.lang.Object getVersion()
+    public java.lang.String getVersion()
     {
         return this._version;
-    } //-- java.lang.Object getVersion() 
+    } //-- java.lang.String getVersion() 
 
     /**
      * Method isValid
@@ -215,10 +215,10 @@ implements java.io.Serializable
      * 
      * @param accessionId the value of field 'accessionId'.
      */
-    public void setAccessionId(java.lang.Object accessionId)
+    public void setAccessionId(java.lang.String accessionId)
     {
         this._accessionId = accessionId;
-    } //-- void setAccessionId(java.lang.Object) 
+    } //-- void setAccessionId(java.lang.String) 
 
     /**
      * Sets the value of field 'id'.
@@ -235,20 +235,20 @@ implements java.io.Serializable
      * 
      * @param source the value of field 'source'.
      */
-    public void setSource(java.lang.Object source)
+    public void setSource(java.lang.String source)
     {
         this._source = source;
-    } //-- void setSource(java.lang.Object) 
+    } //-- void setSource(java.lang.String) 
 
     /**
      * Sets the value of field 'version'.
      * 
      * @param version the value of field 'version'.
      */
-    public void setVersion(java.lang.Object version)
+    public void setVersion(java.lang.String version)
     {
         this._version = version;
-    } //-- void setVersion(java.lang.Object) 
+    } //-- void setVersion(java.lang.String) 
 
     /**
      * Method unmarshal
diff --git a/src/org/vamsas/objects/core/DbRefDescriptor.java b/src/org/vamsas/objects/core/DbRefDescriptor.java
index fbf02dd..bc4d6df 100644
--- a/src/org/vamsas/objects/core/DbRefDescriptor.java
+++ b/src/org/vamsas/objects/core/DbRefDescriptor.java
@@ -64,7 +64,8 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         //-- initialize attribute descriptors
         
         //-- _source
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Object.class, "_source", "source", org.exolab.castor.xml.NodeType.Attribute);
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_source", "source", org.exolab.castor.xml.NodeType.Attribute);
+        desc.setImmutable(true);
         handler = new org.exolab.castor.xml.XMLFieldHandler() {
             public java.lang.Object getValue( java.lang.Object object ) 
                 throws IllegalStateException
@@ -77,14 +78,14 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
             {
                 try {
                     DbRef target = (DbRef) object;
-                    target.setSource( (java.lang.Object) value);
+                    target.setSource( (java.lang.String) value);
                 }
                 catch (java.lang.Exception ex) {
                     throw new IllegalStateException(ex.toString());
                 }
             }
             public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new java.lang.Object();
+                return null;
             }
         };
         desc.setHandler(handler);
@@ -94,10 +95,14 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         //-- validation code for: _source
         fieldValidator = new org.exolab.castor.xml.FieldValidator();
         { //-- local scope
+            StringValidator typeValidator = new StringValidator();
+            typeValidator.setWhiteSpace("preserve");
+            fieldValidator.setValidator(typeValidator);
         }
         desc.setValidator(fieldValidator);
         //-- _version
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Object.class, "_version", "version", org.exolab.castor.xml.NodeType.Attribute);
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_version", "version", org.exolab.castor.xml.NodeType.Attribute);
+        desc.setImmutable(true);
         handler = new org.exolab.castor.xml.XMLFieldHandler() {
             public java.lang.Object getValue( java.lang.Object object ) 
                 throws IllegalStateException
@@ -110,14 +115,14 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
             {
                 try {
                     DbRef target = (DbRef) object;
-                    target.setVersion( (java.lang.Object) value);
+                    target.setVersion( (java.lang.String) value);
                 }
                 catch (java.lang.Exception ex) {
                     throw new IllegalStateException(ex.toString());
                 }
             }
             public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new java.lang.Object();
+                return null;
             }
         };
         desc.setHandler(handler);
@@ -127,10 +132,14 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         //-- validation code for: _version
         fieldValidator = new org.exolab.castor.xml.FieldValidator();
         { //-- local scope
+            StringValidator typeValidator = new StringValidator();
+            typeValidator.setWhiteSpace("preserve");
+            fieldValidator.setValidator(typeValidator);
         }
         desc.setValidator(fieldValidator);
         //-- _accessionId
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Object.class, "_accessionId", "accessionId", org.exolab.castor.xml.NodeType.Attribute);
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_accessionId", "accessionId", org.exolab.castor.xml.NodeType.Attribute);
+        desc.setImmutable(true);
         handler = new org.exolab.castor.xml.XMLFieldHandler() {
             public java.lang.Object getValue( java.lang.Object object ) 
                 throws IllegalStateException
@@ -143,14 +152,14 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
             {
                 try {
                     DbRef target = (DbRef) object;
-                    target.setAccessionId( (java.lang.Object) value);
+                    target.setAccessionId( (java.lang.String) value);
                 }
                 catch (java.lang.Exception ex) {
                     throw new IllegalStateException(ex.toString());
                 }
             }
             public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new java.lang.Object();
+                return null;
             }
         };
         desc.setHandler(handler);
@@ -160,6 +169,9 @@ public class DbRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescript
         //-- validation code for: _accessionId
         fieldValidator = new org.exolab.castor.xml.FieldValidator();
         { //-- local scope
+            StringValidator typeValidator = new StringValidator();
+            typeValidator.setWhiteSpace("preserve");
+            fieldValidator.setValidator(typeValidator);
         }
         desc.setValidator(fieldValidator);
         //-- _id