From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 8 Sep 2015 16:57:06 +0000 (+0100)
Subject: JAL-1645 update appletParameters docs for 2.9
X-Git-Tag: Release_2_10_0~457^2~10
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=47cbe0d4a22563312b7a841d08cf81b823c4cb39;p=jalview.git

JAL-1645 update appletParameters docs for 2.9
---

diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index 34f1846..6dd26e2 100644
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -50,7 +50,12 @@ the applet can be interacted with <em>via</em> its
             <td>file2</td>
             <td>fileName</td>
             <td>A second file to open. If one file is nucleotide and the other peptide, and at least one peptide sequence
-            is the translation of one of the nucleotide sequences, then alignments will be displayed linked in a split frame (<em>since 2.9</em>).</td>
+            matches the translation of one of the nucleotide sequences, then alignments will be displayed linked in a Split Frame. Parameter is ignored if enableSplitFrame is set to false (<em>since 2.9</em>).</td>
+          </tr>
+          <tr> 
+            <td>enableSplitFrame</td>
+            <td>true or false (default true)</td>
+            <td>Enable or disable the display of linked cDNA and Protein alignments in a split frame (<em>since 2.9</em>).</td>
           </tr>
           <tr> 
             <td>sequence1,<br>
@@ -355,6 +360,13 @@ the applet can be interacted with <em>via</em> its
             &lt;param name=&quot;embedded&quot;
           value=&quot;true&quot;&gt; </li>
         </ul>
+        
+        <p><strong>**NEW FEATURES** in Jalview 2.9</strong></p> 
+        <ul>
+        <li>Split Views for cDNA and Protein alignments<br/>Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
+        </li>
+        </ul>
+        </p>
         <p><strong>**NEW FEATURES** in Jalview 2.8</strong></p> 
         <ul>
         <li>Normalised sequence logo display