From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 20 Sep 2005 13:13:32 +0000 (+0000)
Subject: Use selectionGroup to find chosen sequences
X-Git-Tag: Release_2_06~44
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=48b0a1554f4885581d99dac216a83780ceceb41a;p=jalview.git

Use selectionGroup to find chosen sequences
---

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index 7e893eb..8685b3e 100755
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -51,7 +51,7 @@ public class PCAPanel extends GPCAPanel implements Runnable
      * @param av DOCUMENT ME!
      * @param s DOCUMENT ME!
      */
-    public PCAPanel(AlignViewport av, SequenceI[] s)
+    public PCAPanel(AlignViewport av)
     {
         this.av = av;
 
@@ -60,13 +60,12 @@ public class PCAPanel extends GPCAPanel implements Runnable
         {
             seqs = new Sequence[av.getSelectionGroup().getSize()];
 
-            for (int i = 0; i < s.length; i++)
+            for (int i = 0; i < av.getSelectionGroup().getSize(); i++)
             {
                 seqs[i] = av.getSelectionGroup().getSequenceAt(i);
             }
         }
-
-        if (s == null)
+        else
         {
             seqs = new Sequence[av.getAlignment().getHeight()];