From: jprocter Date: Mon, 22 Aug 2005 15:58:28 +0000 (+0000) Subject: Replaced by jpred.java and associated stubs. X-Git-Tag: Release_2_04~27 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=491e9b2d57b98d7c2e7c241506b72d6991973d2e;p=jalview.git Replaced by jpred.java and associated stubs. --- diff --git a/src/ext/vamsas/JPredWS.java b/src/ext/vamsas/JPredWS.java deleted file mode 100755 index 194272e..0000000 --- a/src/ext/vamsas/JPredWS.java +++ /dev/null @@ -1,40 +0,0 @@ -/** - * JPredWS.java - * - * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. - */ - -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package ext.vamsas; - -public interface JPredWS extends java.rmi.Remote { - public java.lang.String predict(ext.vamsas.Sequence in0) - throws java.rmi.RemoteException; - - public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) - throws java.rmi.RemoteException; - - public ext.vamsas.Secstructpred getpredict(java.lang.String in0) - throws java.rmi.RemoteException; - - public ext.vamsas.JpredResult getresult(java.lang.String in0) - throws java.rmi.RemoteException; -} diff --git a/src/ext/vamsas/JPredWSService.java b/src/ext/vamsas/JPredWSService.java deleted file mode 100755 index 3cb5e5d..0000000 --- a/src/ext/vamsas/JPredWSService.java +++ /dev/null @@ -1,35 +0,0 @@ -/** - * JPredWSService.java - * - * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. - */ - -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package ext.vamsas; - -public interface JPredWSService extends javax.xml.rpc.Service { - public java.lang.String getjpredAddress(); - - public ext.vamsas.JPredWS getjpred() throws javax.xml.rpc.ServiceException; - - public ext.vamsas.JPredWS getjpred(java.net.URL portAddress) - throws javax.xml.rpc.ServiceException; -} diff --git a/src/ext/vamsas/JPredWSServiceLocator.java b/src/ext/vamsas/JPredWSServiceLocator.java deleted file mode 100755 index cb4006d..0000000 --- a/src/ext/vamsas/JPredWSServiceLocator.java +++ /dev/null @@ -1,167 +0,0 @@ -/** - * JPredWSServiceLocator.java - * - * This file was auto-generated from WSDL - * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter. - */ - -/* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ -package ext.vamsas; - -public class JPredWSServiceLocator extends org.apache.axis.client.Service - implements ext.vamsas.JPredWSService { - // Use to get a proxy class for jpred - private java.lang.String jpred_address = "http://anaplog.compbio.dundee.ac.uk:8080/axis/services/jpred"; - - // The WSDD service name defaults to the port name. - private java.lang.String jpredWSDDServiceName = "jpred"; - private java.util.HashSet ports = null; - - public JPredWSServiceLocator() { - } - - public JPredWSServiceLocator(org.apache.axis.EngineConfiguration config) { - super(config); - } - - public java.lang.String getjpredAddress() { - return jpred_address; - } - - public java.lang.String getjpredWSDDServiceName() { - return jpredWSDDServiceName; - } - - public void setjpredWSDDServiceName(java.lang.String name) { - jpredWSDDServiceName = name; - } - - public ext.vamsas.JPredWS getjpred() throws javax.xml.rpc.ServiceException { - java.net.URL endpoint; - - try { - endpoint = new java.net.URL(jpred_address); - } catch (java.net.MalformedURLException e) { - throw new javax.xml.rpc.ServiceException(e); - } - - return getjpred(endpoint); - } - - public ext.vamsas.JPredWS getjpred(java.net.URL portAddress) - throws javax.xml.rpc.ServiceException { - try { - ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(portAddress, - this); - _stub.setPortName(getjpredWSDDServiceName()); - - return _stub; - } catch (org.apache.axis.AxisFault e) { - return null; - } - } - - public void setjpredEndpointAddress(java.lang.String address) { - jpred_address = address; - } - - /** - * For the given interface, get the stub implementation. - * If this service has no port for the given interface, - * then ServiceException is thrown. - */ - public java.rmi.Remote getPort(Class serviceEndpointInterface) - throws javax.xml.rpc.ServiceException { - try { - if (ext.vamsas.JPredWS.class.isAssignableFrom( - serviceEndpointInterface)) { - ext.vamsas.JpredSoapBindingStub _stub = new ext.vamsas.JpredSoapBindingStub(new java.net.URL( - jpred_address), this); - _stub.setPortName(getjpredWSDDServiceName()); - - return _stub; - } - } catch (java.lang.Throwable t) { - throw new javax.xml.rpc.ServiceException(t); - } - - throw new javax.xml.rpc.ServiceException( - "There is no stub implementation for the interface: " + - ((serviceEndpointInterface == null) ? "null" - : serviceEndpointInterface.getName())); - } - - /** - * For the given interface, get the stub implementation. - * If this service has no port for the given interface, - * then ServiceException is thrown. - */ - public java.rmi.Remote getPort(javax.xml.namespace.QName portName, - Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException { - if (portName == null) { - return getPort(serviceEndpointInterface); - } - - java.lang.String inputPortName = portName.getLocalPart(); - - if ("jpred".equals(inputPortName)) { - return getjpred(); - } else { - java.rmi.Remote _stub = getPort(serviceEndpointInterface); - ((org.apache.axis.client.Stub) _stub).setPortName(portName); - - return _stub; - } - } - - public javax.xml.namespace.QName getServiceName() { - return new javax.xml.namespace.QName("vamsas", "JPredWSService"); - } - - public java.util.Iterator getPorts() { - if (ports == null) { - ports = new java.util.HashSet(); - ports.add(new javax.xml.namespace.QName("vamsas", "jpred")); - } - - return ports.iterator(); - } - - /** -* Set the endpoint address for the specified port name. -*/ - public void setEndpointAddress(java.lang.String portName, - java.lang.String address) throws javax.xml.rpc.ServiceException { - if ("jpred".equals(portName)) { - setjpredEndpointAddress(address); - } else { // Unknown Port Name - throw new javax.xml.rpc.ServiceException( - " Cannot set Endpoint Address for Unknown Port" + portName); - } - } - - /** -* Set the endpoint address for the specified port name. -*/ - public void setEndpointAddress(javax.xml.namespace.QName portName, - java.lang.String address) throws javax.xml.rpc.ServiceException { - setEndpointAddress(portName.getLocalPart(), address); - } -}