From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 11 Apr 2016 15:42:20 +0000 (+0100)
Subject: JAL-1705 code/comment tidy only
X-Git-Tag: Release_2_10_0~263^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=49476fb0fa050653e9124a916a0d61f487a2b79f;p=jalview.git

JAL-1705 code/comment tidy only
---

diff --git a/src/jalview/ext/ensembl/EnsemblRestClient.java b/src/jalview/ext/ensembl/EnsemblRestClient.java
index 34f8816..441ec7c 100644
--- a/src/jalview/ext/ensembl/EnsemblRestClient.java
+++ b/src/jalview/ext/ensembl/EnsemblRestClient.java
@@ -69,6 +69,12 @@ abstract class EnsemblRestClient extends EnsemblSequenceFetcher
     domain = d;
   }
 
+  /**
+   * Returns the domain name to query e.g. http://rest.ensembl.org or
+   * http://rest.ensemblgenomes.org
+   * 
+   * @return
+   */
   String getDomain()
   {
     return domain;
diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index 0ceb29c..8fb668a 100644
--- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@ -36,8 +36,6 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
 {
   private static final String ALLELES = "alleles";
 
-  protected static final String CONSEQUENCE_TYPE = "consequence_type";
-
   protected static final String PARENT = "Parent";
 
   protected static final String ID = "ID";
@@ -57,7 +55,7 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
     GENOMIC("genomic"),
 
     /**
-     * type=cdna to fetch dna including UTRs
+     * type=cdna to fetch coding dna including UTRs
      */
     CDNA("cdna"),