From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 1 Mar 2019 09:41:58 +0000 (+0000)
Subject: Merge branch 'feature/intervalStoreJ' into merge/JAL-3140
X-Git-Tag: Release_2_11_0~17^2~91^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4a25d1aa51aa9f76efba8eb278bdd976216bb88e;p=jalview.git

Merge branch 'feature/intervalStoreJ' into merge/JAL-3140
---

4a25d1aa51aa9f76efba8eb278bdd976216bb88e
diff --cc src/jalview/datamodel/SequenceI.java
index 48615f0,f33132a..84643d1
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@@ -206,17 -206,14 +206,17 @@@ public interface SequenceI extends ASeq
    public int findPosition(int i);
  
    /**
 -   * Returns the from-to sequence positions (start..) for the given column
 -   * positions (1..), or null if no residues are included in the range
 +   * Returns the sequence positions for first and last residues lying within the
 +   * given column positions [fromColum,toColumn] (where columns are numbered
 +   * from 1), or null if no residues are included in the range
     * 
     * @param fromColum
 +   *          - first column base 1
     * @param toColumn
 +   *          - last column, base 1
     * @return
     */
-   public Range findPositions(int fromColum, int toColumn);
+   public ContiguousI findPositions(int fromColum, int toColumn);
  
    /**
     * Returns an int array where indices correspond to each residue in the