From: gmungoc Date: Tue, 1 Sep 2015 15:39:16 +0000 (+0100) Subject: JAL-1693 split frame opened for get xrefs, translate as cDNA X-Git-Tag: Release_2_10_0~511^2~9 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4b95c0503857df0ec5a7d6a9f5e85220fc7d307b;p=jalview.git JAL-1693 split frame opened for get xrefs, translate as cDNA --- diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html index 50bb37b..10b5611 100755 --- a/help/html/menus/alwcalculate.html +++ b/help/html/menus/alwcalculate.html @@ -83,14 +83,14 @@ annotation which can then be used to sort the alignment via the Sort by→Score menu.
  • Translate as cDNA (not applet)
    This option is visible for nucleotide alignments. - Selecting this option shows the DNA's calculated protein product in a new window. Note that the + Selecting this option shows the DNA's calculated protein product in a new split frame window. Note that the translation is not frame- or intron-aware; it simply translates all codons in each sequence, using the standard genetic code (any incomplete final codon is discarded). You can perform this action on the whole alignment, or selected rows, columns, or regions.
  • Get Cross-References (not applet)
    This option is visible where sequences have cross-references to other standard databases; for example, an EMBL entry may have cross-references to one or more UNIPROT entries. - Select the database to view all cross-referenced sequences in a new window.
    • + Select the database to view all cross-referenced sequences in a new split frame window.
  • Autocalculate Consensus
    For large alignments it can be useful to deselect "Autocalculate Consensus" when editing. This prevents the sometimes lengthy