From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 16 Aug 2017 22:23:53 +0000 (+0100)
Subject: JAL-2418 occupancy row in What’s New
X-Git-Tag: Release_2_10_2~2^2^2^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4d5a920427f86f563f9fae6c677e322f8f13224a;p=jalview.git

JAL-2418 occupancy row in What’s New
---

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 2b792e0..847b1fe 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -69,6 +69,15 @@
       This makes it easy to filter insertions from the alignment view
       (just select the region containing insertions to remove) without
       affecting the rest of the hidden columns.</li>
+    <li><strong>Gap count - a.k.a. the Occupancy
+        Annotation Row</strong><br /> Another way to filter columns according to
+      the presence of gaps is to enable the <strong>Occupancy
+        Annotation</strong> row via Jalview's Preferences. This annotation row
+      shows a histogram of the number of aligned residues at each
+      column. The <a href="features/columnFilterByAnnotation.html">Select
+        By Annotation</a> dialog now also includes a percentage threshold
+      mode, to make it easy to filter alignments to show only those
+      columns with a particular fraction of aligned sequences.</li>
     <li><strong>Recent search history for Find, PDBe and
         Uniprot</strong><br />Easily repeat a previous search for <a
       href="features/search.html#queryhistory">Find</a> and the free