From: cmzmasek@gmail.com Date: Sat, 29 Sep 2012 05:13:26 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4d690ba112b24adfaae44a0623805e831b9bd95c;p=jalview.git in progress --- diff --git a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb index 6abdc23..a2a1ee0 100644 --- a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb +++ b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb @@ -135,9 +135,9 @@ module Evoruby if ( ( e_value_threshold < 0.0 ) || ( prev_i_e_value <= e_value_threshold ) ) && ( ( length_threshold <= 0 ) || ( ( prev_env_to - prev_env_from + 1 ) >= length_threshold.to_f ) ) - if prev_sequence && sequence != prev_sequence - prev_is_pair = false - end + # if prev_sequence && sequence != prev_sequence + # prev_is_pair = false + # end if out_of == 1