From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Mon, 21 Nov 2016 13:03:40 +0000 (+0000)
Subject: JAL-2332 bugfix to enable structure chooser opening for hen lysozyme
X-Git-Tag: Release_2_10_1~11^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=4ef66693f43e72b8f4cc9f8250f2c834421f192f;p=jalview.git

JAL-2332 bugfix to enable structure chooser opening for hen lysozyme
---

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index 3350f6c..21b6e4f 100644
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -83,6 +83,8 @@ public class StructureChooser extends GStructureChooser implements
 
   private boolean cachedPDBExists;
 
+  private static int MAX_QLENGHT = 7820;
+
   public StructureChooser(SequenceI[] selectedSeqs, SequenceI selectedSeq,
           AlignmentPanel ap)
   {
@@ -259,7 +261,8 @@ public class StructureChooser extends GStructureChooser implements
     StringBuilder queryBuilder = new StringBuilder();
     Set<String> seqRefs = new LinkedHashSet<String>();
 
-    if (seq.getAllPDBEntries() != null)
+    if (seq.getAllPDBEntries() != null
+            && queryBuilder.length() < MAX_QLENGHT)
     {
       for (PDBEntry entry : seq.getAllPDBEntries())
       {
@@ -268,7 +271,6 @@ public class StructureChooser extends GStructureChooser implements
           queryBuilder.append("pdb_id:")
                   .append(entry.getId().toLowerCase()).append(" OR ");
           isPDBRefsFound = true;
-          // seqRefs.add(entry.getId());
         }
       }
     }
@@ -277,7 +279,8 @@ public class StructureChooser extends GStructureChooser implements
     {
       for (DBRefEntry dbRef : seq.getDBRefs())
       {
-        if (isValidSeqName(getDBRefId(dbRef)))
+        if (isValidSeqName(getDBRefId(dbRef))
+                && queryBuilder.length() < MAX_QLENGHT)
         {
           if (dbRef.getSource().equalsIgnoreCase(DBRefSource.UNIPROT))
           {