From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Mon, 9 Sep 2013 09:39:33 +0000 (+0100)
Subject: Add lost description of RNAalifold from ViennaRNA
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5041367ba7b1ad4a56d2c64e5bf2734cbc45bf4e;p=jabaws.git

Add lost description of RNAalifold from ViennaRNA
---

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 95b969b..a592c3a 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -225,3 +225,15 @@ jpred.parameters.file  = conf/settings/JpredParameters.xml
 jpred.limits.file      = conf/settings/JpredLimits.xml
 jpred.cluster.cpunum   = 4
 #jpred.cluster.settings = -l h_cpu=24:00:00 -l ram=6000M
+
+###########################################################################################
+#                               RNAALIFOLD CONFIGURATION                                  #
+###########################################################################################
+local.rnaalifold.bin.windows = binaries/windows/ViennaRNA/RNAalifold.exe
+local.rnaalifold.bin         = binaries/src/ViennaRNA/Progs/RNAalifold
+#cluster.rnaalifold.bin      = /homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/ViennaRNA/Progs/RNAalifold
+rnaalifold.parameters.file   = conf/settings/RNAalifoldParameters.xml
+rnaalifold.limits.file       = conf/settings/RNAalifoldLimits.xml
+rnaalifold.cluster.settings  = -P webservices -R y -l h_cpu=24:00:00 -l ram=6000M
+
+