From: Jim Procter Date: Tue, 19 Mar 2019 15:37:04 +0000 (+0000) Subject: JAL-3192 corefile after loading in exampleFile_2_7.jvp X-Git-Tag: Release_2_11_4_0~45^2~18^2~215^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=51df69585ae3d4084e395eb0fce3f830eab1c636;p=jalview.git JAL-3192 corefile after loading in exampleFile_2_7.jvp --- diff --git a/classlists/jvexamplefile.txt b/classlists/jvexamplefile.txt new file mode 100644 index 0000000..e706bb0 --- /dev/null +++ b/classlists/jvexamplefile.txt @@ -0,0 +1,368 @@ +com/stevesoft/pat/Boundary.js +com/stevesoft/pat/Bracket.js +com/stevesoft/pat/Branch.js +com/stevesoft/pat/CaseMgr.js +com/stevesoft/pat/FastBracket.js +com/stevesoft/pat/FastChar.js +com/stevesoft/pat/FastMulti.js +com/stevesoft/pat/NUnicodeAlpha.js +com/stevesoft/pat/NUnicodeCurrency.js +com/stevesoft/pat/NUnicodeDigit.js +com/stevesoft/pat/NUnicodeMath.js +com/stevesoft/pat/NUnicodePunct.js +com/stevesoft/pat/NUnicodeW.js +com/stevesoft/pat/NUnicodeWhite.js +com/stevesoft/pat/NoPattern.js +com/stevesoft/pat/NullPattern.js +com/stevesoft/pat/Or.js +com/stevesoft/pat/OrMark.js +com/stevesoft/pat/Pattern.js +com/stevesoft/pat/PatternSub.js +com/stevesoft/pat/Pthings.js +com/stevesoft/pat/Range.js +com/stevesoft/pat/RegOpt.js +com/stevesoft/pat/RegRes.js +com/stevesoft/pat/Regex.js +com/stevesoft/pat/ReplaceRule.js +com/stevesoft/pat/Rthings.js +com/stevesoft/pat/Skip.js +com/stevesoft/pat/StrPos.js +com/stevesoft/pat/StringLike.js +com/stevesoft/pat/StringRule.js +com/stevesoft/pat/SubMark.js +com/stevesoft/pat/UniValidator.js +com/stevesoft/pat/UnicodeAlpha.js +com/stevesoft/pat/UnicodeCurrency.js +com/stevesoft/pat/UnicodeDigit.js +com/stevesoft/pat/UnicodeLower.js +com/stevesoft/pat/UnicodeMath.js +com/stevesoft/pat/UnicodePunct.js +com/stevesoft/pat/UnicodeUpper.js +com/stevesoft/pat/UnicodeW.js +com/stevesoft/pat/UnicodeWhite.js +com/stevesoft/pat/Validator.js +com/stevesoft/pat/oneChar.js +com/stevesoft/pat/parsePerl.js +com/stevesoft/pat/patInf.js +com/stevesoft/pat/patInt.js +com/stevesoft/pat/wrap/StringWrap.js +intervalstore/api/IntervalI.js +intervalstore/api/IntervalStoreI.js +intervalstore/impl/BinarySearcher.js +intervalstore/impl/IntervalStore.js +intervalstore/impl/NCList.js +intervalstore/impl/NCNode.js +jalview/analysis/GeneticCodeI.js +jalview/analysis/GeneticCodes.js +jalview/analysis/SequenceIdMatcher.js +jalview/api/DBRefEntryI.js +jalview/api/SequenceStructureBinding.js +jalview/api/structures/JalviewStructureDisplayI.js +jalview/datamodel/DBRefEntry.js +jalview/datamodel/Mapping.js +jalview/datamodel/StructureViewerModel.js +jalview/datamodel/features/FeatureAttributes.js +jalview/ext/jmol/JalviewJmolBinding.js +jalview/ext/jmol/JmolCommands.js +jalview/ext/jmol/JmolParser.js +jalview/gui/AppJmol.js +jalview/gui/AppJmolBinding.js +jalview/gui/SliderPanel.js +jalview/gui/StructureViewer.js +jalview/gui/StructureViewerBase.js +jalview/io/JalviewFileChooser.js +jalview/io/JalviewFileFilter.js +jalview/io/JalviewFileView.js +jalview/io/NewickFile.js +jalview/io/StructureFile.js +jalview/jbgui/GSliderPanel.js +jalview/jbgui/GStructureViewer.js +jalview/renderer/seqfeatures/FeatureColourFinder.js +jalview/schemes/IdColourScheme.js +jalview/structure/StructureListener.js +jalview/structure/StructureMapping.js +jalview/structure/StructureMappingcommandSet.js +jalview/structures/models/AAStructureBindingModel.js +jalview/structures/models/SequenceStructureBindingModel.js +jalview/util/CaseInsensitiveString.js +jalview/util/LinkedIdentityHashSet.js +jalview/util/MapList.js +jalview/util/dialogrunner/DialogRunnerI.js +jalview/workers/ComplementConsensusThread.js +jalview/workers/StrucConsensusThread.js +java/awt/datatransfer/DataFlavor.js +java/awt/datatransfer/MimeType.js +java/awt/datatransfer/MimeTypeParameterList.js +java/awt/datatransfer/Transferable.js +java/awt/dnd/DropTargetDropEvent.js +java/awt/dnd/DropTargetEvent.js +java/awt/dnd/peer/DropTargetContextPeer.js +java/awt/font/TextAttribute.js +java/awt/image/ImageConsumer.js +java/awt/image/ImageProducer.js +java/awt/image/PixelGrabber.js +java/io/BufferedWriter.js +java/io/ByteArrayOutputStream.js +java/io/FileOutputStream.js +java/io/FilenameFilter.js +java/io/FilterOutputStream.js +java/io/OutputStream.js +java/io/OutputStreamWriter.js +java/io/PrintStream.js +java/io/PrintWriter.js +java/io/StringReader.js +java/io/StringWriter.js +java/io/Writer.js +java/util/function/Function.js +javajs/api/BytePoster.js +javajs/api/GenericOutputChannel.js +javajs/awt/Font.js +javajs/awt/FontManager.js +javajs/util/A4.js +javajs/util/BS.js +javajs/util/CU.js +javajs/util/DF.js +javajs/util/LimitedLineReader.js +javajs/util/M3.js +javajs/util/M34.js +javajs/util/M4.js +javajs/util/OC.js +javajs/util/P3.js +javajs/util/P3i.js +javajs/util/P4.js +javajs/util/T3.js +javajs/util/T3i.js +javajs/util/T4.js +javajs/util/V3.js +javax/swing/CellRendererPane.js +javax/swing/DefaultListSelectionModel.js +javax/swing/DropMode.js +javax/swing/JFileChooser.js +javax/swing/JList.js +javax/swing/ListSelectionModel.js +javax/swing/Spring.js +javax/swing/SpringLayout.js +javax/swing/event/ListSelectionListener.js +javax/swing/event/MouseInputListener.js +javax/swing/filechooser/FileFilter.js +javax/swing/filechooser/FileView.js +javax/swing/plaf/InputMapUIResource.js +mc_view/Atom.js +mc_view/Bond.js +mc_view/PDBChain.js +mc_view/Residue.js +org/jmol/adapter/readers/pdb/PdbReader.js +org/jmol/adapter/smarter/Atom.js +org/jmol/adapter/smarter/AtomIterator.js +org/jmol/adapter/smarter/AtomSetCollection.js +org/jmol/adapter/smarter/AtomSetCollectionReader.js +org/jmol/adapter/smarter/AtomSetObject.js +org/jmol/adapter/smarter/Bond.js +org/jmol/adapter/smarter/BondIterator.js +org/jmol/adapter/smarter/Resolver.js +org/jmol/adapter/smarter/SmarterJmolAdapter.js +org/jmol/adapter/smarter/Structure.js +org/jmol/adapter/smarter/StructureIterator.js +org/jmol/api/AtomIndexIterator.js +org/jmol/api/EventManager.js +org/jmol/api/GenericFileInterface.js +org/jmol/api/GenericMouseInterface.js +org/jmol/api/GenericPlatform.js +org/jmol/api/Interface.js +org/jmol/api/JmolAdapter.js +org/jmol/api/JmolAdapterAtomIterator.js +org/jmol/api/JmolAdapterBondIterator.js +org/jmol/api/JmolAdapterStructureIterator.js +org/jmol/api/JmolCallbackListener.js +org/jmol/api/JmolGraphicsInterface.js +org/jmol/api/JmolMeasurementClient.js +org/jmol/api/JmolPropertyManager.js +org/jmol/api/JmolRendererInterface.js +org/jmol/api/JmolRepaintManager.js +org/jmol/api/JmolScriptEvaluator.js +org/jmol/api/JmolScriptFunction.js +org/jmol/api/JmolScriptManager.js +org/jmol/api/JmolSelectionListener.js +org/jmol/api/JmolStatusListener.js +org/jmol/api/JmolViewer.js +org/jmol/api/PlatformViewer.js +org/jmol/api/SymmetryInterface.js +org/jmol/api/Translator.js +org/jmol/atomdata/AtomDataServer.js +org/jmol/atomdata/RadiusData.js +org/jmol/awt/AwtFile.js +org/jmol/awt/AwtFont.js +org/jmol/awt/Display.js +org/jmol/awt/Image.js +org/jmol/awt/Mouse.js +org/jmol/awt/Platform.js +org/jmol/bspt/Bspf.js +org/jmol/bspt/Bspt.js +org/jmol/bspt/CubeIterator.js +org/jmol/bspt/Element.js +org/jmol/bspt/Leaf.js +org/jmol/bspt/Node.js +org/jmol/c/CBK.js +org/jmol/c/FIL.js +org/jmol/c/PAL.js +org/jmol/c/STER.js +org/jmol/c/STR.js +org/jmol/c/VDW.js +org/jmol/g3d/CylinderRenderer.js +org/jmol/g3d/G3DRenderer.js +org/jmol/g3d/Graphics3D.js +org/jmol/g3d/HermiteRenderer.js +org/jmol/g3d/LineRenderer.js +org/jmol/g3d/Pixelator.js +org/jmol/g3d/Platform3D.js +org/jmol/g3d/PrecisionRenderer.js +org/jmol/g3d/SphereRenderer.js +org/jmol/g3d/TextRenderer.js +org/jmol/g3d/TextString.js +org/jmol/g3d/TriangleRenderer.js +org/jmol/i18n/GT.js +org/jmol/i18n/Language.js +org/jmol/i18n/Resource.js +org/jmol/io/FileReader.js +org/jmol/modelset/Atom.js +org/jmol/modelset/AtomCollection.js +org/jmol/modelset/AtomIteratorWithinModel.js +org/jmol/modelset/Bond.js +org/jmol/modelset/BondCollection.js +org/jmol/modelset/BondIterator.js +org/jmol/modelset/BondIteratorSelected.js +org/jmol/modelset/Chain.js +org/jmol/modelset/Group.js +org/jmol/modelset/LabelToken.js +org/jmol/modelset/Measurement.js +org/jmol/modelset/MeasurementData.js +org/jmol/modelset/Model.js +org/jmol/modelset/ModelLoader.js +org/jmol/modelset/ModelSet.js +org/jmol/modelset/Orientation.js +org/jmol/modelset/Structure.js +org/jmol/modelset/Text.js +org/jmol/modelset/TickInfo.js +org/jmol/modelsetbio/AlphaMonomer.js +org/jmol/modelsetbio/AlphaPolymer.js +org/jmol/modelsetbio/AminoMonomer.js +org/jmol/modelsetbio/AminoPolymer.js +org/jmol/modelsetbio/BioModel.js +org/jmol/modelsetbio/BioModelSet.js +org/jmol/modelsetbio/BioPolymer.js +org/jmol/modelsetbio/BioResolver.js +org/jmol/modelsetbio/Helix.js +org/jmol/modelsetbio/Monomer.js +org/jmol/modelsetbio/ProteinStructure.js +org/jmol/modelsetbio/Sheet.js +org/jmol/render/BallsRenderer.js +org/jmol/render/BbcageRenderer.js +org/jmol/render/CageRenderer.js +org/jmol/render/FontLineShapeRenderer.js +org/jmol/render/FrankRenderer.js +org/jmol/render/HoverRenderer.js +org/jmol/render/LabelsRenderer.js +org/jmol/render/MeasuresRenderer.js +org/jmol/render/RepaintManager.js +org/jmol/render/ShapeRenderer.js +org/jmol/render/SticksRenderer.js +org/jmol/render/TextRenderer.js +org/jmol/render/UccageRenderer.js +org/jmol/renderbio/BioShapeRenderer.js +org/jmol/renderbio/CartoonRenderer.js +org/jmol/renderbio/RocketsRenderer.js +org/jmol/renderbio/StrandsRenderer.js +org/jmol/script/ContextToken.js +org/jmol/script/SV.js +org/jmol/script/ScriptCompiler.js +org/jmol/script/ScriptContext.js +org/jmol/script/ScriptError.js +org/jmol/script/ScriptEval.js +org/jmol/script/ScriptExpr.js +org/jmol/script/ScriptFlowContext.js +org/jmol/script/ScriptFunction.js +org/jmol/script/ScriptManager.js +org/jmol/script/ScriptMathProcessor.js +org/jmol/script/ScriptParam.js +org/jmol/script/ScriptTokenParser.js +org/jmol/script/T.js +org/jmol/scriptext/CmdExt.js +org/jmol/scriptext/MathExt.js +org/jmol/scriptext/ScriptExt.js +org/jmol/shape/AtomShape.js +org/jmol/shape/Balls.js +org/jmol/shape/Bbcage.js +org/jmol/shape/FontLineShape.js +org/jmol/shape/Frank.js +org/jmol/shape/Hover.js +org/jmol/shape/Labels.js +org/jmol/shape/Measures.js +org/jmol/shape/Mesh.js +org/jmol/shape/Shape.js +org/jmol/shape/Sticks.js +org/jmol/shape/TextShape.js +org/jmol/shape/Uccage.js +org/jmol/shapebio/BioShape.js +org/jmol/shapebio/BioShapeCollection.js +org/jmol/shapebio/Cartoon.js +org/jmol/shapebio/Rockets.js +org/jmol/symmetry/Symmetry.js +org/jmol/symmetry/SymmetryInfo.js +org/jmol/symmetry/UnitCell.js +org/jmol/thread/HoverWatcherThread.js +org/jmol/thread/JmolThread.js +org/jmol/util/BSUtil.js +org/jmol/util/BoxInfo.js +org/jmol/util/C.js +org/jmol/util/ColorEncoder.js +org/jmol/util/CommandHistory.js +org/jmol/util/DefaultLogger.js +org/jmol/util/Edge.js +org/jmol/util/Elements.js +org/jmol/util/Escape.js +org/jmol/util/GData.js +org/jmol/util/Geodesic.js +org/jmol/util/Int2IntHash.js +org/jmol/util/Int2IntHashEntry.js +org/jmol/util/Logger.js +org/jmol/util/LoggerInterface.js +org/jmol/util/MeshSurface.js +org/jmol/util/Node.js +org/jmol/util/Normix.js +org/jmol/util/Point3fi.js +org/jmol/util/Rectangle.js +org/jmol/util/Rgb16.js +org/jmol/util/Shader.js +org/jmol/util/SimpleEdge.js +org/jmol/util/SimpleNode.js +org/jmol/util/SimpleUnitCell.js +org/jmol/util/TempArray.js +org/jmol/viewer/ActionManager.js +org/jmol/viewer/AnimationManager.js +org/jmol/viewer/ColorManager.js +org/jmol/viewer/FileManager.js +org/jmol/viewer/Gesture.js +org/jmol/viewer/GlobalSettings.js +org/jmol/viewer/JC.js +org/jmol/viewer/ModelManager.js +org/jmol/viewer/MotionPoint.js +org/jmol/viewer/MouseState.js +org/jmol/viewer/PropertyManager.js +org/jmol/viewer/SelectionManager.js +org/jmol/viewer/ShapeManager.js +org/jmol/viewer/StateManager.js +org/jmol/viewer/StatusManager.js +org/jmol/viewer/TransformManager.js +org/jmol/viewer/Viewer.js +org/jmol/viewer/binding/Binding.js +org/jmol/viewer/binding/JmolBinding.js +sun/awt/image/OffScreenImageSource.js +sun/font/AttributeValues.js +sun/font/EAttribute.js +sun/swing/StringUIClientPropertyKey.js +sun/swing/SwingUtilities2.js +sun/swing/UIClientPropertyKey.js +swingjs/JSDnD.js +swingjs/JSTempFile.js +swingjs/plaf/BasicHTML.js +swingjs/plaf/JSListUI.js