From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 18 Jul 2017 15:24:26 +0000 (+0100)
Subject: JAL-2432 updated documentation for select/hide by annotation to include As Percentage... 
X-Git-Tag: Release_2_10_3b1~132^2~36^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=52298f6987c5807b9f672e33f416dee9e14e1952;p=jalview.git

JAL-2432 updated documentation for select/hide by annotation to include As Percentage checkbox
---

diff --git a/help/html/features/AnnotationColumnSelectionWithSM.gif b/help/html/features/AnnotationColumnSelectionWithSM.gif
deleted file mode 100644
index 4373493..0000000
Binary files a/help/html/features/AnnotationColumnSelectionWithSM.gif and /dev/null differ
diff --git a/help/html/features/AnnotationColumnSelectionWithSM.png b/help/html/features/AnnotationColumnSelectionWithSM.png
new file mode 100644
index 0000000..c86c5b8
Binary files /dev/null and b/help/html/features/AnnotationColumnSelectionWithSM.png differ
diff --git a/help/html/features/columnFilterByAnnotation.html b/help/html/features/columnFilterByAnnotation.html
index b260cee..2651a10 100644
--- a/help/html/features/columnFilterByAnnotation.html
+++ b/help/html/features/columnFilterByAnnotation.html
@@ -37,7 +37,7 @@
   </p>
   <table>
     <tr>
-      <td><img src="AnnotationColumnSelectionWithSM.gif"></td>
+      <td><img src="AnnotationColumnSelectionWithSM.png"></td>
       <td><img src="AnnotationColumnSelectionWithoutSM.gif"></td>
     </tr>
   </table>
@@ -76,7 +76,9 @@
         <li>Select whether to filter the alignment above or below
           the threshold.</li>
         <li>Change the threshold value with the slider, or enter it
-          in the text box.</li>
+          in the text box.
+	<li>The <em>As Percentage</em> checkbox allows thresholds to
+          be set as a percentage rather than absolute value.</li>
       </ul>
     <li><strong>Actions</strong>
       <ul>