From: Ben Soares Date: Mon, 11 Nov 2024 20:36:59 +0000 (+0000) Subject: JAL-4435 Use the colours X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=52af9a567a4c6009f24b8a9de6e3b43c8d718658;p=jalview.git JAL-4435 Use the colours --- diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java index a7d03c4..87cdd3e 100644 --- a/src/jalview/analysis/AlignmentUtils.java +++ b/src/jalview/analysis/AlignmentUtils.java @@ -40,9 +40,6 @@ import java.util.TreeMap; import java.util.Vector; import java.util.stream.Collectors; -import org.jcolorbrewer.ColorBrewer; - -import jalview.api.AlignCalcWorkerI; import jalview.bin.Console; import jalview.commands.RemoveGapColCommand; import jalview.datamodel.AlignedCodon; @@ -58,23 +55,20 @@ import jalview.datamodel.GeneLociI; import jalview.datamodel.IncompleteCodonException; import jalview.datamodel.Mapping; import jalview.datamodel.PDBEntry; -import jalview.datamodel.SeqCigar; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceGroup; import jalview.datamodel.SequenceI; import jalview.datamodel.features.SequenceFeatures; -import jalview.gui.AlignmentPanel; import jalview.io.gff.SequenceOntologyI; import jalview.schemes.ResidueProperties; +import jalview.util.ColorUtils; import jalview.util.Comparison; import jalview.util.Constants; import jalview.util.DBRefUtils; import jalview.util.IntRangeComparator; import jalview.util.MapList; import jalview.util.MappingUtils; -import jalview.util.MessageManager; -import jalview.workers.SecondaryStructureConsensusThread; /** * grab bag of useful alignment manipulation operations Expect these to be @@ -197,10 +191,10 @@ public class AlignmentUtils // TODO use Character.toLowerCase to avoid creating String objects? char[] upstream = new String(ds .getSequence(s.getStart() - 1 - ustream_ds, s.getStart() - 1)) - .toLowerCase(Locale.ROOT).toCharArray(); + .toLowerCase(Locale.ROOT).toCharArray(); char[] downstream = new String( ds.getSequence(s_end - 1, s_end + dstream_ds)) - .toLowerCase(Locale.ROOT).toCharArray(); + .toLowerCase(Locale.ROOT).toCharArray(); char[] coreseq = s.getSequence(); char[] nseq = new char[offset + upstream.length + downstream.length + coreseq.length]; @@ -3205,62 +3199,85 @@ public class AlignmentUtils } return false; } - + // Method to get the key for a given provider value - public static String getSecondaryStructureProviderKey(String providerValue) { - for (Map.Entry entry : Constants.STRUCTURE_PROVIDERS.entrySet()) { - if (entry.getValue().equals(providerValue)) { - return entry.getKey(); // Return the key (abbreviation) for the matching provider value - } + public static String getSecondaryStructureProviderKey( + String providerValue) + { + for (Map.Entry entry : Constants.STRUCTURE_PROVIDERS + .entrySet()) + { + if (entry.getValue().equals(providerValue)) + { + return entry.getKey(); // Return the key (abbreviation) for the matching + // provider value } - return null; // Return null if no match is found + } + return null; // Return null if no match is found } - - public static String reduceLabelLength(String label) { + + public static String reduceLabelLength(String label) + { // Split the input by " | " String[] parts = label.split(" \\| "); - + // Map the full names to their abbreviations String reducedLabel = Arrays.stream(parts) - .map(fullName -> Constants.STRUCTURE_PROVIDERS.entrySet().stream() + .map(fullName -> Constants.STRUCTURE_PROVIDERS.entrySet() + .stream() .filter(entry -> entry.getValue().equals(fullName)) - .map(Map.Entry::getKey) - .findFirst() - .orElse(fullName)) // Use fullName if no abbreviation is found + .map(Map.Entry::getKey).findFirst().orElse(fullName)) // Use + // fullName + // if + // no + // abbreviation + // is + // found .collect(Collectors.joining(" | ")); - - return reducedLabel; // Return the reduced label if abbreviations were applied + + return reducedLabel; // Return the reduced label if abbreviations were + // applied } - - public static Color getSecondaryStructureProviderColor(String label) { - //return Constants.STRUCTURE_PROVIDERS_COLOR.getOrDefault(label, Color.BLACK); - Color c = Constants.STRUCTURE_PROVIDERS_COLOR.get(label.trim()); - if(c==null) + public static Color getSecondaryStructureProviderColor(String label) + { + + // return Constants.STRUCTURE_PROVIDERS_COLOR.getOrDefault(label, + // Color.BLACK); + Color c = Constants.STRUCTURE_PROVIDERS_COLOR.get(label.trim()); + if (c == null) c = Color.BLACK; return c; } - - - public static void assignSecondaryStructureProviderColor(Map secondaryStructureProviderColorMap, - List labels) { - + + public static void assignSecondaryStructureProviderColor( + Map secondaryStructureProviderColorMap, + List labels) + { + /* // Use a Set to track unique labels Set uniqueLabels = new HashSet<>(labels); - Color[] palette = ColorBrewer.Paired.getColorPalette(uniqueLabels.size()); + Color[] palette = ColorBrewer.Paired + .getColorPalette(uniqueLabels.size()); - List colorList = new ArrayList<>(); Collections.addAll(colorList, palette); Collections.shuffle(colorList); - int i = 0; - + int i = 0; + */ // Loop through each unique label and add it to the map with a color. - for (String label : uniqueLabels) { - // Generate or retrieve a color for the label. - secondaryStructureProviderColorMap.put(label.toUpperCase().trim(), colorList.get(i)); - i++; + // for (String label : uniqueLabels) + for (String label : labels) + { + // Generate or retrieve a color for the label. + String name = label.toUpperCase(Locale.ROOT).trim(); + secondaryStructureProviderColorMap.put(name, + // ColorUtils.getDefaultColourFromName(name)); + ColorUtils.getColourFromNameAndScheme(name, "DESATURATED")); + // secondaryStructureProviderColorMap.put(label.toUpperCase().trim(), + // colorList.get(i)); + // i++; } } } \ No newline at end of file diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java index 7d0222f..18f2919 100755 --- a/src/jalview/gui/TreeCanvas.java +++ b/src/jalview/gui/TreeCanvas.java @@ -30,7 +30,6 @@ import java.awt.Graphics2D; import java.awt.Point; import java.awt.Rectangle; import java.awt.RenderingHints; -import java.awt.Stroke; import java.awt.event.MouseEvent; import java.awt.event.MouseListener; import java.awt.event.MouseMotionListener; @@ -40,7 +39,6 @@ import java.awt.print.PrinterException; import java.awt.print.PrinterJob; import java.util.ArrayList; import java.util.BitSet; -import java.util.Collections; import java.util.HashMap; import java.util.Hashtable; import java.util.LinkedHashSet; @@ -48,7 +46,6 @@ import java.util.List; import java.util.Map; import java.util.Map.Entry; import java.util.Vector; -import org.jcolorbrewer.ColorBrewer; import javax.swing.JPanel; import javax.swing.JScrollPane; @@ -88,7 +85,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, { /** DOCUMENT ME!! */ public static final String PLACEHOLDER = " * "; - + private static final int DASHED_LINE_Y_OFFSET = 6; TreeModel tree; @@ -122,7 +119,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, int offy; private float threshold; - + int labelLengthThreshold = 4; String longestName; @@ -139,8 +136,9 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, BinaryNode highlightNode; boolean applyToAllViews = false; - - //Map to store label positions (BinaryNode -> List of bounding rectangles for the label) + + // Map to store label positions (BinaryNode -> List of bounding rectangles for + // the label) private Map> labelBoundsMap = new HashMap<>(); /** @@ -300,7 +298,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, */ public void drawNode(Graphics g, BinaryNode node, double chunk, double wscale, int width, int offx, int offy) - { + { if (node == null) { return; @@ -332,7 +330,11 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, else { originalColor = av.getSequenceColour(seq); - translucentColor = new Color(originalColor.getRed(), originalColor.getGreen(), originalColor.getBlue(), 128); // 128 for 50% transparency + translucentColor = new Color(originalColor.getRed(), + originalColor.getGreen(), originalColor.getBlue(), 128); // 128 + // for + // 50% + // transparency g.setColor(Color.black); } } @@ -360,15 +362,19 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, nodeLabel = nodeLabel + String.valueOf(node.bootstrap); } - if(node.hasLabel() && showStructureProviderColouredLines) { - - drawLinesAndLabelsForSecondaryStructureProvider(g, node, xstart, xend, ypos, nodeLabel); - - Rectangle labelBounds = new Rectangle(xstart, ypos, xend, ypos + DASHED_LINE_Y_OFFSET); - - // Add the bounding box to the map for this node - labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()).add(labelBounds); - + if (node.hasLabel() && showStructureProviderColouredLines) + { + + drawLinesAndLabelsForSecondaryStructureProvider(g, node, xstart, + xend, ypos, nodeLabel); + + Rectangle labelBounds = new Rectangle(xstart, ypos, xend, + ypos + DASHED_LINE_Y_OFFSET); + + // Add the bounding box to the map for this node + labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()) + .add(labelBounds); + } else if (!nodeLabel.equals("")) { @@ -387,13 +393,14 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, charWidth, charHeight); nameHash.put(node, rect); - + g.setColor(translucentColor); - g.fillRect(xend + 10, ypos - charHeight / 2, charWidth, charHeight); - //g.fillRect(xstart - 2, ypos - 10, (xend + 20 + charWidth) - xstart, 20); - + g.fillRect(xend + 10, ypos - charHeight / 2, charWidth, charHeight); + // g.fillRect(xstart - 2, ypos - 10, (xend + 20 + charWidth) - xstart, + // 20); + g.setColor(Color.black); - + // Colour selected leaves differently boolean isSelected = false; if (tp.isColumnWise()) @@ -433,11 +440,10 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, int xend = (int) (height * wscale) + offx; int ypos = (int) (node.ycount * chunk) + offy; - //g.setColor(node.color.darker()); - + // g.setColor(node.color.darker()); g.setColor(Color.black); - + // Draw horizontal line g.drawLine(xstart, ypos, xend, ypos); if (node == highlightNode) @@ -476,155 +482,169 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, nodeLabel = nodeLabel + String.valueOf(node.bootstrap); } - - //Display secondary structure providers only if: + // Display secondary structure providers only if: // ~ node has Label assigned (Secondary structure providers) // ~ either label or coloured lines option is selected by the user - boolean labelHandled = false; - if(node.hasLabel()) { - + boolean labelHandled = false; + if (node.hasLabel()) + { + if (showStructureProviderColouredLines) { - drawLinesAndLabelsForSecondaryStructureProvider(g, node, xstart, xend, ypos, nodeLabel); - - Rectangle labelBounds = new Rectangle(xstart, ypos, xend, ypos + DASHED_LINE_Y_OFFSET); - - // Add the bounding box to the map for this node (list allows multiple bounding boxes) - labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()).add(labelBounds); + drawLinesAndLabelsForSecondaryStructureProvider(g, node, xstart, + xend, ypos, nodeLabel); + + Rectangle labelBounds = new Rectangle(xstart, ypos, xend, + ypos + DASHED_LINE_Y_OFFSET); + + // Add the bounding box to the map for this node (list allows multiple + // bounding boxes) + labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()) + .add(labelBounds); labelHandled = true; - + } - - if (showStructureProviderLabels && node.count > 3) + + if (showStructureProviderLabels && node.count > 3) { - + String label = node.getLabel(); - - if(label.length() > labelLengthThreshold) { - - //label = AlignmentUtils.reduceLabelLength(label); + + if (label.length() > labelLengthThreshold) + { + + // label = AlignmentUtils.reduceLabelLength(label); } - + nodeLabel = label + " | " + nodeLabel; - + // Split the nodeLabel by "|" String[] lines = nodeLabel.split("\\|"); - + // Draw each string separately String longestLabelString = ""; int i = 0; - for (i = 0; i < lines.length; i++) { - g.drawString(lines[i].trim(), xstart + 2, ypos - 2 - (i * fm.getHeight())); - if(longestLabelString.length() < lines[i].trim().length()) { - longestLabelString = lines[i].trim(); - } + for (i = 0; i < lines.length; i++) + { + g.drawString(lines[i].trim(), xstart + 2, + ypos - 2 - (i * fm.getHeight())); + if (longestLabelString.length() < lines[i].trim().length()) + { + longestLabelString = lines[i].trim(); + } } - + int labelWidth = fm.stringWidth(longestLabelString); - int labelHeight = fm.getHeight() * (i-1); - + int labelHeight = fm.getHeight() * (i - 1); + // Bounding box of the string int xLabelPos = xstart + 2; int yLabelPos = ypos - 2; - Rectangle labelBounds = new Rectangle(xLabelPos, yLabelPos - labelHeight, labelWidth, labelHeight); - - // Add the bounding box to the map for the node - labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()).add(labelBounds); - + Rectangle labelBounds = new Rectangle(xLabelPos, + yLabelPos - labelHeight, labelWidth, labelHeight); + + // Add the bounding box to the map for the node + labelBoundsMap.computeIfAbsent(node, k -> new ArrayList<>()) + .add(labelBounds); + labelHandled = true; } } - + if (!nodeLabel.equals("") && !labelHandled) { g.drawString(nodeLabel, xstart + 2, ypos - 2); } } } - - - private void drawLinesAndLabelsForSecondaryStructureProvider(Graphics g, BinaryNode node, - int xstart, int xend, int ypos, String nodeLabel) { - + + private void drawLinesAndLabelsForSecondaryStructureProvider(Graphics g, + BinaryNode node, int xstart, int xend, int ypos, String nodeLabel) + { + Graphics2D g2d = (Graphics2D) g.create(); // Set dash pattern -// float[] dashPattern = {2, 2}; -// g2d.setStroke(new BasicStroke( -// 2.5f, -// BasicStroke.CAP_BUTT, -// BasicStroke.JOIN_ROUND, -// 0.0f, -// dashPattern, -// 0.0f)); - - g2d.setStroke(new BasicStroke( - 4.0f, - BasicStroke.CAP_BUTT, - BasicStroke.JOIN_ROUND - )); + // float[] dashPattern = {2, 2}; + // g2d.setStroke(new BasicStroke( + // 2.5f, + // BasicStroke.CAP_BUTT, + // BasicStroke.JOIN_ROUND, + // 0.0f, + // dashPattern, + // 0.0f)); + + g2d.setStroke(new BasicStroke(4.0f, BasicStroke.CAP_BUTT, + BasicStroke.JOIN_ROUND)); String label = node.getLabel(); String[] lines = label.split("\\|"); - + int mid = lines.length / 2; - + // Draw lines for the first half int firstHalfLinesCount = mid; - drawSecondaryStructureProviderLinesSection(g2d, - lines, 0, mid, xstart, xend, - ypos - DASHED_LINE_Y_OFFSET, - true); - drawVerticalLineAndLabel(g, xstart, ypos, firstHalfLinesCount, true, nodeLabel); + drawSecondaryStructureProviderLinesSection(g2d, lines, 0, mid, xstart, + xend, ypos - DASHED_LINE_Y_OFFSET, true); + drawVerticalLineAndLabel(g, xstart, ypos, firstHalfLinesCount, true, + nodeLabel); // Draw lines for the second half int secondHalfLinesCount = lines.length - mid; - drawSecondaryStructureProviderLinesSection(g2d, - lines, mid, lines.length, xstart, xend, - ypos, - false); - drawVerticalLineAndLabel(g, xstart, ypos, secondHalfLinesCount, false, nodeLabel); + drawSecondaryStructureProviderLinesSection(g2d, lines, mid, + lines.length, xstart, xend, ypos, false); + drawVerticalLineAndLabel(g, xstart, ypos, secondHalfLinesCount, false, + nodeLabel); - g2d.dispose(); -} + g2d.dispose(); + } - private void drawSecondaryStructureProviderLinesSection(Graphics2D g2d, String[] lines, int start, int end, int xstart, int xend, int baseY, boolean above) { - - for (int i = start, j=0; i < end; i++, j++) { - int adjustedY = above - ? baseY - ((i - start) * DASHED_LINE_Y_OFFSET) - : baseY +((i - start) * DASHED_LINE_Y_OFFSET); - //Color providerColor = AlignmentUtils.getSecondaryStructureProviderColor(lines[i]); - - Map secondaryStructureProviderColorMap = tp.getSecondaryStructureProviderColorMap(); - Color providerColor = secondaryStructureProviderColorMap.getOrDefault(lines[i].toUpperCase().trim(), Color.BLACK); - g2d.setColor(providerColor); - if(i==start && !above) { - g2d.drawLine(xstart, adjustedY, xend-3, adjustedY); - } - else - { - g2d.drawLine(xstart, adjustedY, xend, adjustedY); - } + private void drawSecondaryStructureProviderLinesSection(Graphics2D g2d, + String[] lines, int start, int end, int xstart, int xend, + int baseY, boolean above) + { + + for (int i = start, j = 0; i < end; i++, j++) + { + int adjustedY = above ? baseY - ((i - start) * DASHED_LINE_Y_OFFSET) + : baseY + ((i - start) * DASHED_LINE_Y_OFFSET); + // Color providerColor = + // AlignmentUtils.getSecondaryStructureProviderColor(lines[i]); + + Map secondaryStructureProviderColorMap = tp + .getSecondaryStructureProviderColorMap(); + Color providerColor = secondaryStructureProviderColorMap + .getOrDefault(lines[i].toUpperCase().trim(), Color.BLACK); + g2d.setColor(providerColor); + if (i == start && !above) + { + g2d.drawLine(xstart, adjustedY, xend - 3, adjustedY); + } + else + { + g2d.drawLine(xstart, adjustedY, xend, adjustedY); } + } } - - private void drawVerticalLineAndLabel(Graphics g, int xstart, int ypos, - int linesCount, boolean above, String nodeLabel) { - - int adjustment = (linesCount * DASHED_LINE_Y_OFFSET) + (DASHED_LINE_Y_OFFSET / 3); - int adjustedY = ypos + (above ? -adjustment : adjustment - DASHED_LINE_Y_OFFSET); + + private void drawVerticalLineAndLabel(Graphics g, int xstart, int ypos, + int linesCount, boolean above, String nodeLabel) + { + + int adjustment = (linesCount * DASHED_LINE_Y_OFFSET) + + (DASHED_LINE_Y_OFFSET / 3); + int adjustedY = ypos + + (above ? -adjustment : adjustment - DASHED_LINE_Y_OFFSET); // draw vertical line g.drawLine(xstart, ypos, xstart, adjustedY); // draw label - if(above && !nodeLabel.equals("")) + if (above && !nodeLabel.equals("")) g.drawString(nodeLabel, xstart + 2, adjustedY - 2); -} - + } /** * DOCUMENT ME! @@ -1108,7 +1128,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, av.setCurrentTree(tree); Object ob = findElement(evt.getX(), evt.getY()); - + // Get mouse coordinates int mouseX = evt.getX(); int mouseY = evt.getY(); @@ -1122,30 +1142,34 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, } else - { - + { + if (highlightNode != null) { highlightNode = null; setToolTipText(null); repaint(); } - + // Iterate through the map of label bounding boxes - for (Map.Entry> entry : labelBoundsMap.entrySet()) { - BinaryNode node = entry.getKey(); - List boundsList = entry.getValue(); - - // Check each bounding box for this node - for (Rectangle labelBounds : boundsList) { - if (labelBounds.contains(mouseX, mouseY)) { - // Show tooltip for this node's label - String nodeLabel = node.getDisplayName(); - this.setToolTipText(nodeLabel); - repaint(); - return; // Exit once we find a matching label - } + for (Map.Entry> entry : labelBoundsMap + .entrySet()) + { + BinaryNode node = entry.getKey(); + List boundsList = entry.getValue(); + + // Check each bounding box for this node + for (Rectangle labelBounds : boundsList) + { + if (labelBounds.contains(mouseX, mouseY)) + { + // Show tooltip for this node's label + String nodeLabel = node.getDisplayName(); + this.setToolTipText(nodeLabel); + repaint(); + return; // Exit once we find a matching label } + } } // Clear tooltip if no label is hovered setToolTipText(null); @@ -1265,13 +1289,13 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Map colors = new HashMap(); for (int i = 0; i < groups.size(); i++) { - String colId = groups.get(i).getNodeName(); + String colId = groups.get(i).getBranchIdentifier(); Color col = ColorUtils.getDefaultColourFromName(colId); setColor(groups.get(i), col.brighter()); Vector l = tree.findLeaves(groups.get(i)); - //gatherLabelsTo(groups.get(i), l); + // gatherLabelsTo(groups.get(i), l); if (!tp.isColumnWise()) { createSeqGroupFor(aps, l, col, groups.get(i).getLabel()); @@ -1336,12 +1360,12 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, sb.append(" | "); } first = false; -// if(labelsForNode.size()>1) { -// String providerAbbreviation = AlignmentUtils.getProviderKey(label); -// sb.append(providerAbbreviation); -// } + // if(labelsForNode.size()>1) { + // String providerAbbreviation = AlignmentUtils.getProviderKey(label); + // sb.append(providerAbbreviation); + // } sb.append(label); - + } binaryNode.setLabel(sb.toString()); } @@ -1521,44 +1545,53 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, ColourSchemeI cs = null; SequenceGroup _sg = new SequenceGroup(sequences, null, cs, true, true, false, 0, av.getAlignment().getWidth() - 1); - + // Check if the label is not null and not empty - if(label != null && !label.isEmpty()) { + if (label != null && !label.isEmpty()) + { // Retrieve the existing groups from the alignment List existingGroups = av.getAlignment().getGroups(); - + // Reduce the label length label = AlignmentUtils.reduceLabelLength(label); - + // Create group name based on the label String newGroupName = "JTreeGroup:" + label; - + // Counter for groups with the same name int noOfGroupsWithSameName = 0; - + // Iterate through the existing groups to check for naming conflicts - for (SequenceGroup sg : existingGroups) { - if (sg.getName().equals(newGroupName) || sg.getName().matches(newGroupName + " \\d+")) { + for (SequenceGroup sg : existingGroups) + { + if (sg.getName().equals(newGroupName) + || sg.getName().matches(newGroupName + " \\d+")) + { noOfGroupsWithSameName++; - - // If a group name matches exactly, update the group's name by appending the count - if(sg.getName().equals(newGroupName) ) { - String updatedGroupName = sg.getName() + " " + noOfGroupsWithSameName; + + // If a group name matches exactly, update the group's name by + // appending the count + if (sg.getName().equals(newGroupName)) + { + String updatedGroupName = sg.getName() + " " + + noOfGroupsWithSameName; sg.setName(updatedGroupName); } } } - + // If count > 0, increment the count and append it to the new group name - if(noOfGroupsWithSameName>0) { + if (noOfGroupsWithSameName > 0) + { noOfGroupsWithSameName++; newGroupName = newGroupName + " " + noOfGroupsWithSameName; } - + _sg.setName(newGroupName); } - else { + else + { _sg.setName("JTreeGroup:" + _sg.hashCode()); } _sg.setIdColour(col); @@ -1612,34 +1645,36 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, this.showDistances = state; repaint(); } - + public void hideStructureProviders(boolean state) { - if(state) { + if (state) + { this.showStructureProviderColouredLines = false; this.showStructureProviderLabels = false; repaint(); } } - + public void setShowStructureProviderColouredLines(boolean state) { this.showStructureProviderColouredLines = state; - if(state) { + if (state) + { this.showStructureProviderLabels = false; } repaint(); } - + public void setShowStructureProviderLabels(boolean state) { this.showStructureProviderLabels = state; - if(state) { + if (state) + { this.showStructureProviderColouredLines = false; } repaint(); } - /** * DOCUMENT ME!