From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 11 Apr 2018 15:42:02 +0000 (+0100)
Subject: JAL-2946 catch unexpected SIFTS mapping exceptions and failover to Needleman and... 
X-Git-Tag: Release_2_10_4~32^2^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=52cfe80caf018cf3cc6937304f0b20b57153278f;p=jalview.git

JAL-2946 catch unexpected SIFTS mapping exceptions and failover to Needleman and Wunsch mapping
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 10fe836..7456304 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -572,6 +572,13 @@ public class StructureSelectionManager
             {
               System.err.println(e.getMessage());
             }
+            catch (Exception e)
+            {
+              System.err
+                      .println(
+                              "Unexpected exception during SIFTS mapping - falling back to NW for this sequence/structure pair");
+              System.err.println(e.getMessage());
+            }
           }
           if (!foundSiftsMappings.isEmpty())
           {