From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 31 Aug 2007 13:10:09 +0000 (+0000)
Subject: bugfix for new appdata writes not overwriting existing appdata if the client has... 
X-Git-Tag: Release_0.2~68
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=533a6cb86d1320e850a081a8e8889c90c0ebdb1b;hp=e2a3c1f1c6f96311d9d7dd9381084e48e02bcf8a;p=vamsas.git

bugfix for new appdata writes not overwriting existing appdata if the client has not checked for their existence or accessed them.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@452 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/packages/vamsas-client.jar b/packages/vamsas-client.jar
index 61be668..cb1ebb4 100644
Binary files a/packages/vamsas-client.jar and b/packages/vamsas-client.jar differ
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
index ececd9e..7ea7dda 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
@@ -86,10 +86,19 @@ public class SimpleClientAppdata implements IClientAppdata {
     this.clientdoc = clientdoc;
   }
   /**
+   * ensures that the appData information for this client 
+   * instance has been extracted from the vamsas document provided by clientdoc.
+   */
+  private void extractAppData()
+  {
+    if (!accessedDocument)
+      _extractAppData(clientdoc.getVamsasDocument());
+  }
+  /**
    * gets appropriate app data for the application, if it exists in this dataset
    * Called by every accessor to ensure data has been retrieved from document.
    */
-  private void extractAppData(uk.ac.vamsas.objects.core.VamsasDocument doc) {
+  private void _extractAppData(uk.ac.vamsas.objects.core.VamsasDocument doc) {
     if (doc==null) {
       log.debug("extractAppData called for null document object");
       return;
@@ -238,7 +247,7 @@ public class SimpleClientAppdata implements IClientAppdata {
       appdName = "User's Appdata";
     }    
     log.debug("getting "+appdName+" as a byte array");
-    extractAppData(clientdoc.getVamsasDocument());
+    extractAppData();
     AppData object;
     if (!clientOrUser) {
       object = appsGlobal;
@@ -271,7 +280,7 @@ public class SimpleClientAppdata implements IClientAppdata {
     }
     if (log.isDebugEnabled())
       log.debug("getting "+appdName+" as an input stream.");
-    extractAppData(clientdoc.getVamsasDocument());
+    extractAppData();
     AppData object;
     if (!clientOrUser) {
       object = appsGlobal;
@@ -315,6 +324,8 @@ public class SimpleClientAppdata implements IClientAppdata {
    * methods for writing new AppData entries.
    */
   private AppDataOutputStream _getAppdataOutputStream(boolean clientOrUser) {
+    // Must access document to get any existing references
+    extractAppData();
     String apdname;
     SessionFile apdfile=null;
     if (!clientOrUser) {
@@ -432,7 +443,7 @@ public class SimpleClientAppdata implements IClientAppdata {
   public boolean hasClientAppdata() {
     if (clientdoc==null)
       throw new Error("Implementation error, Improperly initialized SimpleClientAppdata.");
-    extractAppData(clientdoc.getVamsasDocument());
+    extractAppData();
     // LATER - check validity of a DataReference before we return true
     // TODO: return true if usersData is null but we have already written a new data stream 
     if ((appsGlobal!=null) && (appsGlobal.getDataReference()!=null || appsGlobal.getData()!=null))
@@ -446,7 +457,7 @@ public class SimpleClientAppdata implements IClientAppdata {
   public boolean hasUserAppdata() {
     if (clientdoc==null)
       throw new Error("Implementation error, Improperly initialized SimpleClientAppdata.");
-    extractAppData(clientdoc.getVamsasDocument());
+    extractAppData();
     // LATER - check validity of a DataReference before we return true
     // TODO: return true if usersData is null but we have already written a new data stream 
     if ((usersData!=null) && (usersData.getDataReference()!=null || usersData.getData()!=null))