From: cmzmasek@gmail.com Date: Sat, 14 Jul 2012 00:34:47 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=53d8575aae564594ae21f5ceb7f3c9ef1ab9078e;p=jalview.git in progress --- diff --git a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb index bf38d07..c81bb23 100644 --- a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb +++ b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb @@ -246,7 +246,7 @@ module Evoruby my_readlink = File.readlink( my_path ) end current_msa = read_fasta_file( my_file ) - end + if ( per_species_counter > 0 ) print_counts( per_species_counter, log, Constants::LINE_DELIMITER ) @@ -334,7 +334,7 @@ module Evoruby rescue Exception => e Util.fatal_error( PRG_NAME, "error: " + e.to_s ) end - end + end begin io.write_to_file( new_msa_normalized_ids, out_file_path_normalized_ids_fasta_file, fasta_writer )