From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 24 May 2017 10:26:11 +0000 (+0100)
Subject: JAL-2542 correct adjustment of sequence features for flanking sequence
X-Git-Tag: Release_2_10_3b1~241
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=53ff06f7f5e6f8c6d1f594f19a3df90153ead765;p=jalview.git

JAL-2542 correct adjustment of sequence features for flanking sequence
---

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index fd511dc..493a13c 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -705,7 +705,7 @@ public class DBRefFetcher implements Runnable
                */
               int start = sequenceStart;
               int end = sequence.getEnd();
-              int startShift = 1 - absStart - start;
+              final int startShift = absStart - start + 1;
 
               if (startShift != 0)
               {