From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 12 Nov 2013 00:23:03 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5434c800bc4852faa4cc84551f2811d00c263375;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
index 93eac07..7f84afa 100644
--- a/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
@@ -264,11 +264,12 @@ module Evoruby
     end
 
     def update_phylo_pl_options( phylo_pl_options, bootstraps )
-      unless phylo_pl_options =~ /B\d/
-        phylo_pl_options = 'B' + bootstraps.to_s + phylo_pl_options
+      opts = phylo_pl_options
+      unless opts  =~ /B\d/
+        opts = 'B' + bootstraps.to_s + opts
       end
-      phylo_pl_options = '-' + phylo_pl_options
-      phylo_pl_options
+      opts = '-' + opts
+      opts
     end
 
     def subst_min_length( command, id, min_lengths )