From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 26 Nov 2015 14:41:44 +0000 (+0000)
Subject: JAL-1978 quick hack to prototype msa grid by shrinking coloured box background for... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=55ab1d6dc5b9b6ae410f5e7709e5560988e60ecf;p=jalview.git

JAL-1978 quick hack to prototype msa grid by shrinking coloured box background for each residue
---

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 258a229..c3d3d29 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -57,6 +57,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
 
   boolean forOverview = false;
 
+  boolean v_inset = true, h_inset = true;
+
   /**
    * Creates a new SequenceRenderer object.
    * 
@@ -228,7 +230,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
             .getCharHeight();
 
     Color tempColour = null;
-
+    int linset = (h_inset ? 1 : 0), vinset = (v_inset ? 1 : 0);
     while (i <= end)
     {
       resBoxColour = Color.white;
@@ -249,12 +251,12 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
 
       }
 
-      if (resBoxColour != tempColour)
+      if (true) // resBoxColour != tempColour)
       {
         if (tempColour != null)
         {
-          graphics.fillRect(avWidth * (curStart - start), y1, curWidth,
-                  avHeight);
+          graphics.fillRect(avWidth * (curStart - start), y1, curWidth
+                  - linset, avHeight - vinset);
         }
 
         graphics.setColor(resBoxColour);
@@ -271,7 +273,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
       i++;
     }
 
-    graphics.fillRect(avWidth * (curStart - start), y1, curWidth, avHeight);
+    graphics.fillRect(avWidth * (curStart - start), y1, curWidth - linset,
+            avHeight - vinset);
 
   }