From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 24 Aug 2012 14:27:15 +0000 (+0100)
Subject: JAL-879 adding to _rnaList will trigger another onUINewStructure event and cause... 
X-Git-Tag: Jalview_2_9~265^2~30
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5646f33d5e9dcbf30339abb53f2fca40d0f768b3;p=jalview.git

JAL-879 adding to _rnaList will trigger another onUINewStructure event and cause infinite loop
---

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index 0bc84ce..5b7d654 100644
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -810,7 +810,12 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding
 
   public void onUINewStructure(VARNAConfig v, RNA r)
   {
-    _rnaList.add(v, r, "", true);
+    // patch to fix infinite loop
+    // The problem is that onUINewStructure is called when user clicks 
+    // check with Yann about whether Jalview should do anything with this event.
+    // e.g. if user has used VARNA's menu to import a structure .. Jalview may need to be told which structure is displayed.
+    
+    // _rnaList.add(v, r, "", true);
   }
 
   public void onWarningEmitted(String s)