From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 29 Aug 2016 21:09:50 +0000 (+0100)
Subject: JAL-2154 ENA specific Ensembl canonical db prefixes
X-Git-Tag: Release_2_10_0~47^2~4^2~36
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5665f47f06e60c4a3c2715fde7adc02ab4c0186f;p=jalview.git

JAL-2154 ENA specific Ensembl canonical db prefixes
---

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index d5d0cf5..1965c20 100755
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -59,6 +59,11 @@ public class DBRefUtils
 
     canonicalSourceNameLookup.put("pdb", DBRefSource.PDB);
     canonicalSourceNameLookup.put("ensembl", DBRefSource.ENSEMBL);
+    // Ensembl Gn and Tr are for Ensembl genomic and transcript IDs as served
+    // from ENA.
+    canonicalSourceNameLookup.put("ensembl-tr", DBRefSource.ENSEMBL);
+    canonicalSourceNameLookup.put("ensembl-gn", DBRefSource.ENSEMBL);
+
 
     dasCoordinateSystemsLookup.put("pdbresnum", DBRefSource.PDB);
     dasCoordinateSystemsLookup.put("uniprot", DBRefSource.UNIPROT);