From: Ben Soares <b.soares@dundee.ac.uk>
Date: Sat, 6 Feb 2021 18:19:17 +0000 (+0000)
Subject: JAL-3251 debian build using maven, simplified build.gradle not needed
X-Git-Tag: Release_2_11_1_4~9^2~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=56f393f1fd0a054020ebb9f7af5b1516e256de88;p=jalview.git

JAL-3251 debian build using maven, simplified build.gradle not needed
---

diff --git a/utils/debian/build.gradle.debian b/utils/debian/build.gradle.debian
deleted file mode 100644
index 042baf5..0000000
--- a/utils/debian/build.gradle.debian
+++ /dev/null
@@ -1,461 +0,0 @@
-/* Convention for properties.  Read from gradle.properties, use lower_case_underlines for property names.
- * For properties set within build.gradle, use camelCaseNoSpace.
- */
-import org.apache.tools.ant.filters.ReplaceTokens
-
-
-
-
-plugins {
-  id 'java'
-}
-
-
-
-// in ext the values are cast to Object. Ensure string values are cast as String (and not GStringImpl) for later use
-def string(Object o) {
-  return o == null ? "" : o.toString()
-}
-
-
-ext {
-  jalviewDirAbsolutePath = file(jalviewDir).getAbsolutePath()
-  jalviewDirRelativePath = jalviewDir
-
-
-  ////  
-  // Import releaseProps from the RELEASE file
-  // or a file specified via JALVIEW_RELEASE_FILE if defined
-  // Expect jalview.version and target release branch in jalview.release        
-  def releaseProps = new Properties();
-  def releasePropFile = findProperty("JALVIEW_RELEASE_FILE");
-  def defaultReleasePropFile = "${jalviewDirAbsolutePath}/RELEASE";
-  try {
-    (new File(releasePropFile!=null ? releasePropFile : defaultReleasePropFile)).withInputStream { 
-     releaseProps.load(it)
-    }
-  } catch (Exception fileLoadError) {
-    throw new Error("Couldn't load release properties file "+(releasePropFile==null ? defaultReleasePropFile : "from custom location: releasePropFile"),fileLoadError);
-  }
-  ////
-  // Set JALVIEW_VERSION if it is not already set
-  if (findProperty("JALVIEW_VERSION")==null || "".equals(JALVIEW_VERSION)) {
-    JALVIEW_VERSION = releaseProps.get("jalview.version")
-  }
-  
-
-  // essentials
-  bareSourceDir = string(source_dir)
-  sourceDir = string("${jalviewDir}/${bareSourceDir}")
-  resourceDir = string("${jalviewDir}/${resource_dir}")
-  bareTestSourceDir = string(test_source_dir)
-  testDir = string("${jalviewDir}/${bareTestSourceDir}")
-
-  classesDir = string("${jalviewDir}/${classes_dir}")
-
-
-  resourceClassesDir = classesDir
-
-  testSourceDir = testDir
-  testClassesDir = "${jalviewDir}/${test_output_dir}"
-
-  buildProperties = string("${classesDir}/${build_properties_file}")
-  gitHash = string("")
-  gitBranch = string("")
-
-  println("Using a ${CHANNEL} profile.")
-
-  additional_compiler_args = []
-  // configure classpath/args for j8/j11 compilation
-  if (JAVA_VERSION.equals("1.8")) {
-    JAVA_INTEGER_VERSION = string("8")
-    //libDir = j8libDir
-    libDir = j11libDir
-    libDistDir = j8libDir
-    compile_source_compatibility = 1.8
-    compile_target_compatibility = 1.8
-  } else if (JAVA_VERSION.equals("11")) {
-    JAVA_INTEGER_VERSION = string("11")
-    libDir = j11libDir
-    libDistDir = j11libDir
-    compile_source_compatibility = 11
-    compile_target_compatibility = 11
-  } else if (JAVA_VERSION.equals("12") || JAVA_VERSION.equals("13")) {
-    JAVA_INTEGER_VERSION = JAVA_VERSION
-    libDir = j11libDir
-    libDistDir = j11libDir
-    compile_source_compatibility = JAVA_VERSION
-    compile_target_compatibility = JAVA_VERSION
-  } else {
-    throw new GradleException("JAVA_VERSION=${JAVA_VERSION} not currently supported by Jalview")
-  }
-
-
-
-
-  buildingHTML = string("${jalviewDir}/${doc_dir}/building.html")
-  helpFile = string("${resourceClassesDir}/${help_dir}/help.jhm")
-  helpParentDir = string("${jalviewDir}/${help_parent_dir}")
-  helpSourceDir = string("${helpParentDir}/${help_dir}")
-
-
-  // ENDEXT
-}
-
-
-sourceSets {
-  main {
-    java {
-      srcDirs sourceDir
-      outputDir = file(classesDir)
-    }
-
-    resources {
-      srcDirs resourceDir
-      srcDirs += helpParentDir
-    }
-
-    jar.destinationDir = file("${jalviewDir}/${package_dir}")
-
-    compileClasspath = files(sourceSets.main.java.outputDir)
-    compileClasspath += fileTree(dir: "${jalviewDir}/${libDir}", include: ["*.jar"])
-
-    runtimeClasspath = compileClasspath
-  }
-
-  test {
-    java {
-      srcDirs testSourceDir
-      outputDir = file(testClassesDir)
-    }
-
-    resources {
-      srcDirs = sourceSets.main.resources.srcDirs
-    }
-
-    compileClasspath = files( sourceSets.test.java.outputDir )
-    compileClasspath += sourceSets.main.compileClasspath
-    compileClasspath += fileTree(dir: "${jalviewDir}/${utils_dir}/testnglibs", include: ["**/*.jar"])
-
-    runtimeClasspath = compileClasspath
-  }
-
-}
-
-
-
-
-compileJava {
-
-  doFirst {
-    sourceCompatibility = compile_source_compatibility
-    targetCompatibility = compile_target_compatibility
-    options.compilerArgs = additional_compiler_args
-    print ("Setting target compatibility to "+targetCompatibility+"\n")
-  }
-
-}
-
-
-compileTestJava {
-  doFirst {
-    sourceCompatibility = compile_source_compatibility
-    targetCompatibility = compile_target_compatibility
-    options.compilerArgs = additional_compiler_args
-    print ("Setting target compatibility to "+targetCompatibility+"\n")
-  }
-}
-
-
-clean {
-  doFirst {
-    delete sourceSets.main.java.outputDir
-  }
-}
-
-
-cleanTest {
-  doFirst {
-    delete sourceSets.test.java.outputDir
-  }
-}
-
-
-// format is a string like date.format("dd MMMM yyyy")
-def getDate(format) {
-  def date = new Date()
-  return date.format(format)
-}
-
-
-task setGitVals {
-  def hashStdOut = new ByteArrayOutputStream()
-  exec {
-    commandLine "git", "rev-parse", "--short", "HEAD"
-    standardOutput = hashStdOut
-    ignoreExitValue true
-  }
-
-  def branchStdOut = new ByteArrayOutputStream()
-  exec {
-    commandLine "git", "rev-parse", "--abbrev-ref", "HEAD"
-    standardOutput = branchStdOut
-    ignoreExitValue true
-  }
-
-  gitHash = hashStdOut.toString().trim()
-  gitBranch = branchStdOut.toString().trim()
-
-  outputs.upToDateWhen { false }
-}
-
-
-task createBuildProperties(type: WriteProperties) {
-  dependsOn setGitVals
-  inputs.dir(sourceDir)
-  inputs.dir(resourceDir)
-  file(buildProperties).getParentFile().mkdirs()
-  outputFile (buildProperties)
-  // taking time specific comment out to allow better incremental builds
-  comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd HH:mm:ss")
-  //comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd")
-  property "BUILD_DATE", getDate("HH:mm:ss dd MMMM yyyy")
-  property "VERSION", JALVIEW_VERSION
-  property "INSTALLATION", INSTALLATION+" git-commit:"+gitHash+" ["+gitBranch+"]"
-  outputs.file(outputFile)
-}
-
-
-task cleanBuildingHTML(type: Delete) {
-  doFirst {
-    delete buildingHTML
-  }
-}
-
-
-task convertBuildingMD(type: Exec) {
-  dependsOn cleanBuildingHTML
-  def buildingMD = "${jalviewDir}/${doc_dir}/building.md"
-  def css = "${jalviewDir}/${doc_dir}/github.css"
-
-  def pandoc = null
-  pandoc_exec.split(",").each {
-    if (file(it.trim()).exists()) {
-      pandoc = it.trim()
-      return true
-    }
-  }
-
-  def hostname = "hostname".execute().text.trim()
-  def buildtoolsPandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
-  if ((pandoc == null || ! file(pandoc).exists()) && file(buildtoolsPandoc).exists()) {
-    pandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
-  }
-
-  doFirst {
-    if (pandoc != null && file(pandoc).exists()) {
-        commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
-    } else {
-        println("Cannot find pandoc. Skipping convert building.md to HTML")
-        throw new StopExecutionException("Cannot find pandoc. Skipping convert building.md to HTML")
-    }
-  }
-
-  ignoreExitValue true
-
-  inputs.file(buildingMD)
-  inputs.file(css)
-  outputs.file(buildingHTML)
-}
-
-
-clean {
-  doFirst {
-    delete buildingHTML
-  }
-}
-
-
-task syncDocs(type: Sync) {
-  dependsOn convertBuildingMD
-  def syncDir = "${resourceClassesDir}/${doc_dir}"
-  from fileTree("${jalviewDir}/${doc_dir}")
-  into syncDir
-
-}
-
-
-task copyHelp(type: Copy) {
-  def inputDir = helpSourceDir
-  def outputDir = "${resourceClassesDir}/${help_dir}"
-  from(inputDir) {
-    exclude '**/*.gif'
-    exclude '**/*.jpg'
-    exclude '**/*.png'
-    filter(ReplaceTokens,
-      beginToken: '$$',
-      endToken: '$$',
-      tokens: [
-        'Version-Rel': JALVIEW_VERSION,
-        'Year-Rel': getDate("yyyy")
-      ]
-    )
-  }
-  from(inputDir) {
-    include '**/*.gif'
-    include '**/*.jpg'
-    include '**/*.png'
-  }
-  into outputDir
-
-  inputs.dir(inputDir)
-  outputs.files(helpFile)
-  outputs.dir(outputDir)
-}
-
-
-task syncResources(type: Sync) {
-  from resourceDir
-  include "**/*.*"
-  into "${resourceClassesDir}"
-  preserve {
-    include "**"
-  }
-}
-
-
-task prepare {
-  dependsOn syncResources
-  dependsOn syncDocs
-  dependsOn copyHelp
-}
-
-
-//testReportDirName = "test-reports" // note that test workingDir will be $jalviewDir
-test {
-  dependsOn prepare
-  //dependsOn compileJava ////? DELETE
-
-  dependsOn compileJava //?
-
-  useTestNG() {
-    includeGroups testng_groups
-    excludeGroups testng_excluded_groups
-    preserveOrder true
-    useDefaultListeners=true
-  }
-
-  maxHeapSize = "1024m"
-
-  workingDir = jalviewDir
-  //systemProperties 'clover.jar' System.properties.clover.jar
-  def testLaf = project.findProperty("test_laf")
-  if (testLaf != null) {
-    println("Setting Test LaF to '${testLaf}'")
-    systemProperty "laf", testLaf
-  }
-  def testHiDPIScale = project.findProperty("test_HiDPIScale")
-  if (testHiDPIScale != null) {
-    println("Setting Test HiDPI Scale to '${testHiDPIScale}'")
-    systemProperty "sun.java2d.uiScale", testHiDPIScale
-  }
-  sourceCompatibility = compile_source_compatibility
-  targetCompatibility = compile_target_compatibility
-  jvmArgs += additional_compiler_args
-
-  doFirst {
-  }
-}
-
-
-task buildIndices(type: JavaExec) {
-  dependsOn copyHelp
-  classpath = sourceSets.main.compileClasspath
-  main = "com.sun.java.help.search.Indexer"
-  workingDir = "${classesDir}/${help_dir}"
-  def argDir = "html"
-  args = [ argDir ]
-  inputs.dir("${workingDir}/${argDir}")
-
-  outputs.dir("${classesDir}/doc")
-  outputs.dir("${classesDir}/help")
-  outputs.file("${workingDir}/JavaHelpSearch/DOCS")
-  outputs.file("${workingDir}/JavaHelpSearch/DOCS.TAB")
-  outputs.file("${workingDir}/JavaHelpSearch/OFFSETS")
-  outputs.file("${workingDir}/JavaHelpSearch/POSITIONS")
-  outputs.file("${workingDir}/JavaHelpSearch/SCHEMA")
-  outputs.file("${workingDir}/JavaHelpSearch/TMAP")
-}
-
-
-task compileLinkCheck(type: JavaCompile) {
-  options.fork = true
-  classpath = files("${jalviewDir}/${utils_dir}")
-  destinationDir = file("${jalviewDir}/${utils_dir}")
-  source = fileTree(dir: "${jalviewDir}/${utils_dir}", include: ["HelpLinksChecker.java", "BufferedLineReader.java"])
-
-  inputs.file("${jalviewDir}/${utils_dir}/HelpLinksChecker.java")
-  inputs.file("${jalviewDir}/${utils_dir}/HelpLinksChecker.java")
-  outputs.file("${jalviewDir}/${utils_dir}/HelpLinksChecker.class")
-  outputs.file("${jalviewDir}/${utils_dir}/BufferedLineReader.class")
-}
-
-
-task linkCheck(type: JavaExec) {
-  dependsOn prepare, compileLinkCheck
-
-  def helpLinksCheckerOutFile = file("${jalviewDir}/${utils_dir}/HelpLinksChecker.out")
-  classpath = files("${jalviewDir}/${utils_dir}")
-  main = "HelpLinksChecker"
-  workingDir = jalviewDir
-  args = [ "${classesDir}/${help_dir}", "-nointernet" ]
-
-  def outFOS = new FileOutputStream(helpLinksCheckerOutFile, false) // false == don't append
-  def errFOS = outFOS
-  standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
-    outFOS,
-    standardOutput)
-  errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
-    outFOS,
-    errorOutput)
-
-  inputs.dir("${classesDir}/${help_dir}")
-  outputs.file(helpLinksCheckerOutFile)
-}
-
-// import the pubhtmlhelp target
-ant.properties.basedir = "${jalviewDir}"
-ant.properties.helpBuildDir = "${jalviewDirAbsolutePath}/${classes_dir}/${help_dir}"
-ant.importBuild "${utils_dir}/publishHelp.xml"
-
-
-task cleanPackageDir(type: Delete) {
-  doFirst {
-    delete fileTree(dir: "${jalviewDir}/${package_dir}", include: "*.jar")
-  }
-}
-
-jar {
-  dependsOn linkCheck
-  dependsOn buildIndices
-  dependsOn createBuildProperties
-
-  manifest {
-    attributes "Main-Class": main_class,
-    "Permissions": "all-permissions",
-    "Application-Name": "Jalview Desktop",
-    "Codebase": application_codebase
-  }
-
-  destinationDir = file("${jalviewDir}/${package_dir}")
-  archiveName = rootProject.name+".jar"
-
-  exclude "cache*/**"
-  exclude "*.jar"
-  exclude "*.jar.*"
-  exclude "**/*.jar"
-  exclude "**/*.jar.*"
-
-  inputs.dir(classesDir)
-  outputs.file("${jalviewDir}/${package_dir}/${archiveName}")
-}