From: Charles Ofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Mon, 8 Dec 2014 11:47:36 +0000 (+0000)
Subject: JAL-1613 hotfix for duplicated sequence after pairwise alignment
X-Git-Tag: Release_2_8_2b1^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=59390e2e3c5d2956d5bf7b21ab79bdcbdf1849b7;p=jalview.git

JAL-1613 hotfix for duplicated sequence after pairwise alignment
---

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 69b6ba6..bc2c27c 100755
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -100,7 +100,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
         textarea.append(as.getOutput());
         sequences.add(as.getAlignedSeq1());
-        sequences.add(as.getAlignedSeq1());
+        sequences.add(as.getAlignedSeq2());
       }
     }