From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 30 May 2011 06:35:37 +0000 (+0100)
Subject: bug for clients using NJTree directly - pwtype should be valid score
X-Git-Tag: Release_2_7~177
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5960ee8bfc53ed73be59d00dffc52bf4714e3b0e;p=jalview.git

bug for clients using NJTree directly - pwtype should be valid score
matrix or PID, otherwise it is set by default to BLOSUM62
---

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
old mode 100755
new mode 100644
index e11e1f5..e5c1643
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -237,7 +237,7 @@ public class NJTree
     {
       if (ResidueProperties.getScoreMatrix(pwtype) == null)
       {
-        type = "BLOSUM62";
+        pwtype = "BLOSUM62";
       }
     }