From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 1 Jul 2015 08:13:22 +0000 (+0100)
Subject: JAL-1619 align the added sequences to match what they are added to
X-Git-Tag: Release_2_10_0~585^2~9
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=59bcebdf52d535ff621840b2d836ecfc0f605ec1;p=jalview.git

JAL-1619 align the added sequences to match what they are added to
---

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index cf82bfe..9eaee20 100644
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -909,6 +909,7 @@ public class AlignViewport extends AlignmentViewport implements
 
     if (openSplitPane)
     {
+      al.alignAs(thisAlignment);
       protein = openSplitFrame(newAlignFrame, thisAlignment,
               protein.getCodonFrames());
     }