From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 31 Aug 2018 15:03:42 +0000 (+0100)
Subject: JAL-3053 JAL-3061 JAL-3095 release notes
X-Git-Tag: Release_2_10_5~33
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=59fec9dd8b4b13b6a6c61d5c65b94a412e9d4464;p=jalview.git

JAL-3053 JAL-3061 JAL-3095 release notes
---

diff --git a/help/html/releases.html b/help/html/releases.html
index c566aae..35ce9b5 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -81,28 +81,44 @@ li:before {
     <td><div align="left">
         <em></em>
         <ul>
-          <li>
-            <!-- JAL-247 -->Hidden sequence markers and representative
-            sequence bolding included when exporting alignment as EPS,
-            SVG, PNG or HTML. <em>Display of these can be
-              configured via the Format menu or in batch mode with a
-              jalview properties file.</em>
-          </li>
-          <li>
-            <!-- JAL-3003 -->Alignment is black in exported EPS file
-            when sequences are selected in exported view.</em>
-          </li>
-          <li>
-            <!-- JAL-3059 -->Groups with different coloured borders
-            aren't rendered with correct colour.
-          </li>
-          <li>
-            <!-- JAL-3092 -->Jalview could hang when importing certain types of knotted RNA secondary structure
-          </li>
-          <li>
-            <!-- JAL-3095 -->Sequence highlight in trimmed VARNA 2D structure is incorrect for sequences that do not start at 1
-          </li>
-        </ul>
+            <li>
+              <!-- JAL-247 -->Hidden sequence markers and representative
+              sequence bolding included when exporting alignment as EPS,
+              SVG, PNG or HTML. <em>Display of these can be
+                configured via the Format menu or in batch mode with a
+                jalview properties file.</em>
+            </li>
+            <li>
+              <!-- JAL-3003 -->Alignment is black in exported EPS file
+              when sequences are selected in exported view.</em>
+            </li>
+            <li>
+              <!-- JAL-3059 -->Groups with different coloured borders
+              aren't rendered with correct colour.
+            </li>
+            <li>
+              <!-- JAL-3092 -->Jalview could hang when importing certain
+              types of knotted RNA secondary structure
+            </li>
+            <li>
+              <!-- JAL-3095 -->Sequence highlight and selection in
+              trimmed VARNA 2D structure is incorrect for sequences that
+              do not start at 1
+            </li>
+            <li>
+              <!-- JAL-3061 -->'.' inserted into RNA secondary structure
+              annotation when columns are inserted into an alignment
+            </li>
+            <li>
+              <!-- JAL-3061 -->'.' written into RNA secondary structure
+              annotation when writing out Stockholm format
+            </li>
+            <li>
+              <!-- JAL-3053 -->Jalview annotation rows containing upper
+              and lower-case 'E' and 'H' do not automatically get
+              treated as RNA secondary structure
+            </li>
+          </ul>
       </div>
     </td>
     </tr>