From: jprocter <Jim Procter>
Date: Fri, 30 Oct 2009 10:23:34 +0000 (+0000)
Subject: na pdb: highlight any part of a residue, not just the CA atom
X-Git-Tag: Release_2_5~169
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5a022fd59287844dca8cbfbc6cd0ff4b0fb3dd9c;p=jalview.git

na pdb: highlight any part of a residue, not just the CA atom
---

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index c7be8fb..aeec53d 100644
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -550,10 +550,10 @@ public class AppletJmol extends EmbmenuFrame implements StructureListener,
       resetLastRes.append(":" + chain);
     }
 
-    eval.append(";wireframe 100;" + eval.toString() + ".CA;");
+    eval.append(";wireframe 100;" + eval.toString() + ".*;");
 
     resetLastRes.append(";wireframe 0;" + resetLastRes.toString()
-            + ".CA;spacefill 0;");
+            + ".*;spacefill 0;");
 
     eval.append("spacefill 200;select none");
 
diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 3b94bf4..8e12b0d 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -596,6 +596,7 @@ public class AppJmol extends GStructureViewer implements StructureListener,
   public void highlightAtom(int atomIndex, int pdbResNum, String chain,
           String pdbfile)
   {
+    // TODO: rna: remove CA dependency in select string
     if (!pdbfile.equals(pdbentry.getFile()))
       return;
 
@@ -616,10 +617,10 @@ public class AppJmol extends GStructureViewer implements StructureListener,
       resetLastRes.append(":" + chain);
     }
 
-    eval.append(";wireframe 100;" + eval.toString() + ".CA;");
+    eval.append(";wireframe 100;" + eval.toString() + ".*;");
 
     resetLastRes.append(";wireframe 0;" + resetLastRes.toString()
-            + ".CA;spacefill 0;");
+            + ".*;spacefill 0;");
 
     eval.append("spacefill 200;select none");