From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 1 May 2014 13:33:44 +0000 (+0100)
Subject: JAL-961 configure conservation worker from alignment viewport
X-Git-Tag: Jalview_2_9~190^2~18
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5a8a5d9b76313a49f9a3279b31e7201c0c63a675;p=jalview.git

JAL-961 configure conservation worker from alignment viewport
---

diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java
index 681007e..a8bc268 100644
--- a/src/jalview/workers/ConservationThread.java
+++ b/src/jalview/workers/ConservationThread.java
@@ -80,7 +80,7 @@ public class ConservationThread extends AlignCalcWorker implements
       ourAnnot.add(conservation);
       ourAnnot.add(quality);
       ourAnnots = ourAnnot;
-
+      ConsPercGaps = alignViewport.getConsPercGaps();
       // AlignViewport.UPDATING_CONSERVATION = true;
 
       if (alignment == null || (alWidth = alignment.getWidth()) < 0)