From: kiramt <k.mourao@dundee.ac.uk>
Date: Wed, 11 Oct 2017 11:11:03 +0000 (+0100)
Subject: JAL-2742 test updates following review
X-Git-Tag: Release_2_10_3b1~111^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5b22db9e5b963c2b58b4e39d97e518ace2af0870;p=jalview.git

JAL-2742 test updates following review
---

diff --git a/test/jalview/datamodel/CigarArrayTest.java b/test/jalview/datamodel/CigarArrayTest.java
index 20dcc96..ceb0387 100644
--- a/test/jalview/datamodel/CigarArrayTest.java
+++ b/test/jalview/datamodel/CigarArrayTest.java
@@ -68,8 +68,13 @@ public class CigarArrayTest
     // we are comparing a sequence to its own subsequence (the group) + hidden
     // columns.
 
-    CigarArray cig = new CigarArray(al, hc, sg1);
+    // no hidden columns case
+    CigarArray cig = new CigarArray(al, new HiddenColumns(), sg1);
     String result = cig.getCigarstring();
+    assertEquals(result, "22M");
+
+    cig = new CigarArray(al, hc, sg1);
+    result = cig.getCigarstring();
     assertEquals(result, "1M4D9M5D3M");
 
     // group starts at hidden cols