From: cmzmasek@gmail.com Date: Fri, 8 Jun 2012 18:29:39 +0000 (+0000) Subject: phylotastic hackathon at NESCENT 120608 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5ca67600d2c327df81b3c8be5629add0b34a51a1;p=jalview.git phylotastic hackathon at NESCENT 120608 --- diff --git a/forester/aptx/aptx_example_files/Tree_of_Life_2461_with_detailed_taxonomy_data.phylo.xml b/forester/aptx/aptx_example_files/Tree_of_Life_2461_with_detailed_taxonomy_data.phylo.xml new file mode 100644 index 0000000..31011b1 --- /dev/null +++ b/forester/aptx/aptx_example_files/Tree_of_Life_2461_with_detailed_taxonomy_data.phylo.xml @@ -0,0 +1,1221 @@ + + + + 2461 + + + 2461 + Cnidaria + cnidarians + Sea anemones, corals, jellyfish, sea pens, hydra + phylum + + + + 17634 + Anthozoa + anthozoans + anthozoans + Sea Anemones, Corals, Sea Pens + class + + + + 17642 + Alcyonaria + + + + 120149 + Alcyonacea + soft corals + Soft corals + order + + + + + 120158 + Heliopora + genus + + + + + 120153 + 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