From: Ben Soares Date: Fri, 3 Feb 2023 20:57:43 +0000 (+0000) Subject: JAL-629 "updated" json-simple X-Git-Tag: Release_2_11_4_0~487 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5d01a31888d046245981a4171850acd63a1f2862;p=jalview.git JAL-629 "updated" json-simple --- diff --git a/examples/test_fab41.result/sample.a3m b/examples/test_fab41.result/sample.a3m new file mode 100644 index 0000000..6408d6f --- /dev/null +++ b/examples/test_fab41.result/sample.a3m @@ -0,0 +1,50 @@ +>101/1-59 +PIAQIHILEGRSDEQKETLIREVSEAISRSLDAPLTSVRVIITEMAKGHFGIGGELASK +>A0A7C4BER2 87 0.406 6.001E-18 0 58 59 1 59 65/1-59 +PVVTIEMWEGRTPEQKKALVEAVTSAVAGAIGCPPEAVEVIIHEVPKVNWGIGGQIASE +>A0A1M5AEK1 85 0.338 2.938E-17 0 58 59 1 59 68/1-59 +PIYHIEMMEGRTPEQKRKLVEAVTRVSVDILGGSPEAVHVLIHEIPRDNWATGGQLWSE +>A0A429EDM9 84 0.355 7.621E-17 0 58 59 1 59 61/1-59 +PMINVSMFPGRTAEQKQALVREVTDAFVRTCGGNPEGVWVTINEIPAEHWASGGTLFSE +>A0A7C3TX99 84 0.372 7.621E-17 0 58 59 1 59 62/1-59 +PVVTVEMWEGRTDEQKRKLAELVTNAVCEAIGCPREAVEVIMREVPRKNWAIGGKLASE +>A0A4P6L4R2 83 0.322 1.977E-16 0 58 59 1 59 61/1-59 +PTINVQLFEGRTPEQKRAFVQAVTQATVETLGSSPESVDIILHEVKREHWATGGKLWSE +>UPI0003671E29 83 0.362 1.977E-16 0 57 59 1 58 61/1-58 +PLINVTMFPGRTEEQKRELVRELTDAFARTCDANPDGVWVTINEVPPERWAVGGRLIS- +>A0A847M6U1 83 0.379 1.977E-16 0 57 59 1 58 63/1-58 +PFVTVKMWEGRTTEQKAAIIEKVTEALIESMGVEPEHVSVVLQEYPKENWGVGGQLAS- +>A0A7C3BUL5 82 0.322 2.716E-16 0 58 59 1 59 60/1-59 +PLVTVEMWEGRTVEQKKELAQGITSVMTDKLGIPPEAVTIIIKDVPKHNWAIGGKLSSE +>A0A1F9XKG5 82 0.372 3.733E-16 0 58 59 1 59 65/1-59 +PVIKIEMWKGRTHEQKKKLVEKVTSATVESIGCPPEAVQIIINEVDKENWGLAGQLASE +>A0A0F0E1Y4 81 0.338 5.129E-16 0 58 59 1 59 61/1-59 +PILRLEMHPGRTPEQKRDFVREVTQVAVEVLKCPPESVDVVIYEVPREQWAKAGKLVSE +>UPI0011096F0C 81 0.355 5.129E-16 0 58 59 1 59 63/1-59 +PTYHVEMFEGRSPEQKKQLVEEVTRVTAETLGCSPEAVDIIITEVKRENWSTGGKLWSE +>A0A4Q3J2V2 81 0.389 5.129E-16 0 58 59 1 59 64/1-59 +PTIHVQMFEGRSAEQKRDFVREVTEAACRTLGCKPDSVDIIIQDVSRANWASGGKLWSE +>UPI00168717C6 81 0.310 5.129E-16 0 57 59 1 58 64/1-58 +PFVVVHMWDGRSVEQKRELAKAITDAMVEHAGARPDALHVAIQEYPKENWARAGVLGS- +>UPI00197BDC4A 81 0.392 7.048E-16 2 57 59 1 56 66/1-56 +--IHVEMYPGRTPEQKADLVREVTDAFVRTCGGNPDGVWVVIQEVPGEHWGVGGQLAS- +>UPI00069C494D 81 0.305 7.048E-16 0 58 59 1 59 83/1-59 +PVVIIEMYPGRTPEQKRALVKAVTEAMVEHAGARPDHLHVILHEVAPENWALAGRLGTE +>A0A8J3FTW4 81 0.338 9.684E-16 0 58 59 1 59 64/1-58 +PLIRVSMFPGRTEEQKRELVAETEAFLRTCGGKREGVWVVIDEVPREHWAVGGRLSSE +>UPI00124B17A4 80 0.327 1.829E-15 0 57 59 1 58 61/1-57 +PTINVQMFAGRSAEQKRAFVKATDATCESLGCKPEGVDVIIQEVKREDWATGGKLWS- +>A0A662P0H6 80 0.440 1.829E-15 0 58 59 1 59 61/1-58 +PIVEIKMWAGRTEEQKERLVKETEAVTRALGVEPEETQVIIIEIPKSNWGVSGRLASK +>UPI0015FCCAFB 80 0.310 1.829E-15 0 57 59 1 58 61/1-57 +PHITVQHLAGRSTEQKRELARETDAYVRVTGIKPESVWVTFQDVPAEDWAVGGTPIA- +>A0A2S1XR35 80 0.293 1.829E-15 0 57 59 1 58 62/1-57 +PLINVQLFEGRTPEQKRAYAKATDASVEVLGCSPEAVDVIFHDVKKSDWASGGKLWS- +>A0A327JYV8 80 0.288 1.829E-15 0 58 59 1 59 63/1-58 +PVVTVEMWTGRSREQKRALVRATDAMVTHAGAKPDNLHVIIHEVPKEDWALAGVMGDE +>A0A7V8JTY1 79 0.379 2.513E-15 0 57 59 1 58 60/1-57 +PTFNIQLFEGRSLEQRRELVKATEVTCKTLQCPPESVDIIIQEVKKENWATGGKLWS- +>A0A7C6ZGD0 79 0.327 2.513E-15 0 57 59 1 58 61/1-57 +PIVRVEMWEGRTVEQKRELAKATEDMVKIAGAKPEAVVVIFEDVPKHNWATGGVLWS- +>UPI0005AB22ED 79 0.362 2.513E-15 0 57 59 1 58 61/1-57 +PLIQVKQLAGRSEEQKRAIARETDAFVRATGVRPEAVWVTIDELPPENWAIGGTLVA- diff --git a/j11lib/json-simple-1.1.1.jar b/j11lib/json-simple-1.1.1.jar new file mode 100644 index 0000000..dfd5856 Binary files /dev/null and b/j11lib/json-simple-1.1.1.jar differ diff --git a/j11lib/json_simple-1.1.jar b/j11lib/json_simple-1.1.jar deleted file mode 100644 index f395f41..0000000 Binary files a/j11lib/json_simple-1.1.jar and /dev/null differ diff --git a/j8lib/json-simple-1.1.1.jar b/j8lib/json-simple-1.1.1.jar new file mode 100644 index 0000000..dfd5856 Binary files /dev/null and b/j8lib/json-simple-1.1.1.jar differ diff --git a/j8lib/json_simple-1.1.jar b/j8lib/json_simple-1.1.jar deleted file mode 100644 index f395f41..0000000 Binary files a/j8lib/json_simple-1.1.jar and /dev/null differ